Analysis of interatomic Contacts of Structural Units in PDB entry:
8VZN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VZN entry

There are 3 chains in PDB entry 8VZN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 100ASP 522
B
 GLY 12THR 128
C
 ILE 22LYS 104
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 8VZN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
106 127Right-handed alpha
Helix 2
AA2
A
131 139Right-handed alpha
Helix 3
AA3
A
142 158Right-handed alpha
Helix 4
AA4
A
160 171Right-handed alpha
Helix 5
AA5
A
172 191Right-handed alpha
Helix 6
AA6
A
192 195Right-handed 310
Helix 7
AA7
A
199 219Right-handed alpha
Helix 8
AA8
A
220 229Right-handed alpha
Helix 9
AA9
A
233 260Right-handed alpha
Helix 10
AB1
A
268 295Right-handed alpha
Helix 11
AB2
A
304 312Right-handed alpha
Helix 12
AB3
A
320 328Right-handed alpha
Helix 13
AB4
A
330 353Right-handed alpha
Helix 14
AB5
A
353 362Right-handed alpha
Helix 15
AB6
A
365 395Right-handed alpha
Helix 16
AB7
A
396 419Right-handed alpha
Helix 17
AB8
A
423 453Right-handed alpha
Helix 18
AB9
A
457 488Right-handed alpha
Helix 19
AC1
A
488 508Right-handed alpha
Helix 20
AC2
A
514 521Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 8VZN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 14first strand
Strand 2
B
126 128parallel
Strand 3
B
95 103anti-parallel
Strand 4
B
35 43anti-parallel
Strand 5
B
47 54anti-parallel
Strand 6
B
61 63anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 26first strand
Strand 2
B
81 85anti-parallel
Strand 3
B
72 75anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 55first strand
Strand 2
C
46 50anti-parallel
Strand 3
C
34 39anti-parallel
Strand 4
C
86 91anti-parallel
Strand 5
C
98 99anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il