Analysis of interatomic Contacts of Structural Units in PDB entry:
8VZO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VZO entry

There are 3 chains in PDB entry 8VZO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 99ASN 520
B
 GLU 1THR 129
D
 SER 31GLY 100
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8VZO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
105 131Right-handed alpha
Helix 2
AA2
A
131 140Right-handed alpha
Helix 3
AA3
A
142 172Right-handed alpha
Helix 4
AA4
A
172 191Right-handed alpha
Helix 5
AA5
A
199 216Right-handed alpha
Helix 6
AA6
A
220 229Right-handed alpha
Helix 7
AA7
A
233 260Right-handed alpha
Helix 8
AA8
A
265 295Right-handed alpha
Helix 9
AA9
A
304 311Right-handed alpha
Helix 10
AB1
A
320 328Right-handed alpha
Helix 11
AB2
A
330 362Right-handed alpha
Helix 12
AB3
A
365 395Right-handed alpha
Helix 13
AB4
A
396 419Right-handed alpha
Helix 14
AB5
A
423 453Right-handed alpha
Helix 15
AB6
A
457 488Right-handed alpha
Helix 16
AB7
A
488 509Right-handed alpha
Helix 17
AB8
A
514 519Right-handed alpha
Helix 18
AB9
B
90 94Right-handed 310
Helix 19
AC1
D
80 84Right-handed 310
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There are 5 sheets in PDB entry 8VZO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 10first strand
Strand 2
B
21 28anti-parallel
Strand 3
B
81 86anti-parallel
Strand 4
B
71 76anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
48 55anti-parallel
Strand 3
B
37 42anti-parallel
Strand 4
B
95 102anti-parallel
Strand 5
B
119 122anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
48 55anti-parallel
Strand 3
B
37 42anti-parallel
Strand 4
B
95 102anti-parallel
Strand 5
B
126 128anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
54 55first strand
Strand 2
D
46 50anti-parallel
Strand 3
D
34 39anti-parallel
Strand 4
D
86 91anti-parallel
Strand 5
D
98 99anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
63 68first strand
Strand 2
D
71 76anti-parallel
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