Analysis of interatomic Contacts of Structural Units in PDB entry:
8W04

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8W04 entry

There are 2 chains in PDB entry 8W04 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 42	TRP 507
B	LEU 42	TRP 507

There are 28 helices in PDB entry 8W04. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	90	99	Right-handed alpha
Helix 2	AA2	A	199	205	Right-handed 310
Helix 3	AA3	A	246	255	Right-handed alpha
Helix 4	AA4	A	255	260	Right-handed alpha
Helix 5	AA5	A	260	266	Right-handed alpha
Helix 6	AA6	A	287	305	Right-handed alpha
Helix 7	AA7	A	328	344	Right-handed alpha
Helix 8	AA8	A	368	373	Right-handed alpha
Helix 9	AA9	A	397	401	Right-handed 310
Helix 10	AB1	A	406	408	Right-handed 310
Helix 11	AB2	A	421	437	Right-handed alpha
Helix 12	AB3	A	441	445	Right-handed 310
Helix 13	AB4	A	460	467	Right-handed alpha
Helix 14	AB5	A	469	477	Right-handed alpha
Helix 15	AB6	B	90	99	Right-handed alpha
Helix 16	AB7	B	199	205	Right-handed 310
Helix 17	AB8	B	246	255	Right-handed alpha
Helix 18	AB9	B	255	260	Right-handed alpha
Helix 19	AC1	B	260	266	Right-handed alpha
Helix 20	AC2	B	287	305	Right-handed alpha
Helix 21	AC3	B	328	344	Right-handed alpha
Helix 22	AC4	B	368	373	Right-handed alpha
Helix 23	AC5	B	397	401	Right-handed 310
Helix 24	AC6	B	406	408	Right-handed 310
Helix 25	AC7	B	421	437	Right-handed alpha
Helix 26	AC8	B	441	445	Right-handed 310
Helix 27	AC9	B	460	467	Right-handed alpha
Helix 28	AD1	B	469	476	Right-handed alpha

There are 11 sheets in PDB entry 8W04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	47	first strand
Strand 2	A	64	72	anti-parallel
Strand 3	A	128	132	anti-parallel
Strand 4	A	109	112	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	59	first strand
Strand 2	A	164	171	parallel
Strand 3	A	142	149	anti-parallel
Strand 4	A	103	104	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	59	first strand
Strand 2	A	164	171	parallel
Strand 3	A	142	149	anti-parallel
Strand 4	A	80	86	anti-parallel
Strand 5	A	115	118	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	245	first strand
Strand 2	A	224	234	anti-parallel
Strand 3	A	269	276	parallel
Strand 4	A	309	313	parallel
Strand 5	A	347	352	parallel
Strand 6	A	375	378	parallel
Strand 7	A	410	411	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	245	first strand
Strand 2	A	224	234	anti-parallel
Strand 3	A	188	194	parallel
Strand 4	A	447	450	parallel
Strand 5	A	414	415	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	220	first strand
Strand 2	A	207	210	anti-parallel
Strand 3	A	484	487	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	47	first strand
Strand 2	B	64	72	anti-parallel
Strand 3	B	128	132	anti-parallel
Strand 4	B	109	112	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	59	first strand
Strand 2	B	165	171	parallel
Strand 3	B	142	149	anti-parallel
Strand 4	B	103	104	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	59	first strand
Strand 2	B	165	171	parallel
Strand 3	B	142	149	anti-parallel
Strand 4	B	80	86	anti-parallel
Strand 5	B	115	118	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	245	first strand
Strand 2	B	224	234	anti-parallel
Strand 3	B	269	276	parallel
Strand 4	B	309	313	parallel
Strand 5	B	347	352	parallel
Strand 6	B	375	378	parallel
Strand 7	B	410	415	parallel
Strand 8	B	447	450	parallel
Strand 9	B	188	194	parallel
Strand 10	B	224	234	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	220	first strand
Strand 2	B	207	210	anti-parallel
Strand 3	B	484	487	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8W04

Analysis of interatomic Contacts of Structural Units in PDB entry:
8W04