Analysis of interatomic Contacts of Structural Units in PDB entry:
8W08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W08 entry

There are 2 chains in PDB entry 8W08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3GLN 249
B
 ALA 2ALA 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8W08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 30Right-handed alpha
Helix 2
AA2
A
43 45Right-handed 310
Helix 3
AA3
A
46 54Right-handed alpha
Helix 4
AA4
A
78 85Right-handed alpha
Helix 5
AA5
A
94 100Right-handed alpha
Helix 6
AA6
A
104 118Right-handed alpha
Helix 7
AA7
A
129 135Right-handed alpha
Helix 8
AA8
A
137 151Right-handed alpha
Helix 9
AA9
A
155 159Right-handed 310
Helix 10
AB1
A
167 171Right-handed 310
Helix 11
AB2
A
178 197Right-handed alpha
Helix 12
AB3
A
198 205Right-handed alpha
Helix 13
AB4
A
217 224Right-handed alpha
Helix 14
AB5
A
233 238Right-handed 310
Helix 15
AB6
A
239 246Right-handed alpha
Helix 16
AB7
B
16 30Right-handed alpha
Helix 17
AB8
B
43 45Right-handed 310
Helix 18
AB9
B
46 54Right-handed alpha
Helix 19
AC1
B
78 85Right-handed alpha
Helix 20
AC2
B
94 100Right-handed alpha
Helix 21
AC3
B
104 118Right-handed alpha
Helix 22
AC4
B
129 135Right-handed alpha
Helix 23
AC5
B
137 151Right-handed alpha
Helix 24
AC6
B
155 159Right-handed 310
Helix 25
AC7
B
167 171Right-handed 310
Helix 26
AC8
B
178 197Right-handed alpha
Helix 27
AC9
B
198 205Right-handed alpha
Helix 28
AD1
B
217 223Right-handed alpha
Helix 29
AD2
B
233 239Right-handed 310
Helix 30
AD3
B
240 246Right-handed alpha
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There are 2 sheets in PDB entry 8W08. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
37 41parallel
Strand 3
A
58 62parallel
Strand 4
A
89 92parallel
Strand 5
A
121 126parallel
Strand 6
A
161 165parallel
Strand 7
A
207 209parallel
Strand 8
A
229 232parallel
Strand 9
A
6 10parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 10first strand
Strand 2
B
37 41parallel
Strand 3
B
58 62parallel
Strand 4
B
89 92parallel
Strand 5
B
121 126parallel
Strand 6
B
161 165parallel
Strand 7
B
207 209parallel
Strand 8
B
229 232parallel
Strand 9
B
6 10parallel
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