Analysis of interatomic Contacts of Structural Units in PDB entry:
8W09

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8W09 entry

There are 12 chains in PDB entry 8W09 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	ILE 268
B	LEU 2	ASP 270
C	GLU 212	ALA 276
D	ASN 222	ILE 268
E	A 15	C 33
F	G 5	DA 21
I	PHE 1	ILE 268
K	LEU 2	ASP 270
L	GLU 212	ALA 276
M	ASN 222	ILE 268
N	A 15	C 33
O	G 5	DA 21

There are 48 helices in PDB entry 8W09. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	3	Right-handed 310
Helix 2	AA2	A	4	16	Right-handed alpha
Helix 3	AA3	A	18	27	Right-handed alpha
Helix 4	AA4	A	29	39	Right-handed alpha
Helix 5	AA5	A	93	108	Right-handed alpha
Helix 6	AA6	A	123	134	Right-handed alpha
Helix 7	AA7	A	144	147	Right-handed 310
Helix 8	AA8	A	148	166	Right-handed alpha
Helix 9	AA9	A	171	186	Right-handed alpha
Helix 10	AB1	A	195	221	Right-handed alpha
Helix 11	AB2	B	4	16	Right-handed alpha
Helix 12	AB3	B	18	26	Right-handed alpha
Helix 13	AB4	B	29	39	Right-handed alpha
Helix 14	AB5	B	40	44	Right-handed 310
Helix 15	AB6	B	93	108	Right-handed alpha
Helix 16	AB7	B	123	134	Right-handed alpha
Helix 17	AB8	B	150	165	Right-handed alpha
Helix 18	AB9	B	171	185	Right-handed alpha
Helix 19	AC1	B	195	221	Right-handed alpha
Helix 20	AC2	C	213	222	Right-handed alpha
Helix 21	AC3	C	263	265	Right-handed 310
Helix 22	AC4	C	270	275	Right-handed alpha
Helix 23	AC5	D	261	263	Right-handed 310
Helix 24	AC6	I	3	16	Right-handed alpha
Helix 25	AC7	I	18	27	Right-handed alpha
Helix 26	AC8	I	29	39	Right-handed alpha
Helix 27	AC9	I	93	108	Right-handed alpha
Helix 28	AD1	I	123	134	Right-handed alpha
Helix 29	AD2	I	144	147	Right-handed 310
Helix 30	AD3	I	148	166	Right-handed alpha
Helix 31	AD4	I	167	169	Right-handed 310
Helix 32	AD5	I	171	186	Right-handed alpha
Helix 33	AD6	I	195	221	Right-handed alpha
Helix 34	AD7	K	5	16	Right-handed alpha
Helix 35	AD8	K	18	25	Right-handed alpha
Helix 36	AD9	K	29	38	Right-handed alpha
Helix 37	AE1	K	39	44	Right-handed 310
Helix 38	AE2	K	93	108	Right-handed alpha
Helix 39	AE3	K	119	122	Right-handed 310
Helix 40	AE4	K	123	134	Right-handed alpha
Helix 41	AE5	K	150	166	Right-handed alpha
Helix 42	AE6	K	167	169	Right-handed 310
Helix 43	AE7	K	171	186	Right-handed alpha
Helix 44	AE8	K	195	221	Right-handed alpha
Helix 45	AE9	L	213	221	Right-handed alpha
Helix 46	AF1	L	263	265	Right-handed 310
Helix 47	AF2	L	270	275	Right-handed alpha
Helix 48	AF3	M	261	263	Right-handed 310

There are 14 sheets in PDB entry 8W09. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	89	first strand
Strand 2	A	71	78	anti-parallel
Strand 3	A	61	68	anti-parallel
Strand 4	A	112	115	parallel
Strand 5	A	136	139	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	226	first strand
Strand 2	A	238	245	anti-parallel
Strand 3	A	248	252	anti-parallel
Strand 4	A	257	261	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	89	first strand
Strand 2	B	71	78	anti-parallel
Strand 3	B	60	68	anti-parallel
Strand 4	B	112	114	parallel
Strand 5	B	136	138	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	227	first strand
Strand 2	B	265	269	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	244	first strand
Strand 2	B	249	252	anti-parallel
Strand 3	B	257	260	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	261	first strand
Strand 2	C	248	252	anti-parallel
Strand 3	C	238	244	anti-parallel
Strand 4	C	224	226	anti-parallel
Strand 5	C	266	268	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	260	first strand
Strand 2	D	249	253	anti-parallel
Strand 3	D	239	244	anti-parallel
Strand 4	D	224	227	anti-parallel
Strand 5	D	265	268	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	84	89	first strand
Strand 2	I	71	78	anti-parallel
Strand 3	I	60	68	anti-parallel
Strand 4	I	112	115	parallel
Strand 5	I	136	139	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	257	261	first strand
Strand 2	I	248	252	anti-parallel
Strand 3	I	239	245	anti-parallel
Strand 4	I	224	227	anti-parallel
Strand 5	I	265	267	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	84	89	first strand
Strand 2	K	71	78	anti-parallel
Strand 3	K	60	68	anti-parallel
Strand 4	K	112	114	parallel
Strand 5	K	136	138	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	223	227	first strand
Strand 2	K	265	269	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	240	244	first strand
Strand 2	K	248	252	anti-parallel
Strand 3	K	257	261	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	257	261	first strand
Strand 2	L	248	252	anti-parallel
Strand 3	L	238	244	anti-parallel
Strand 4	L	224	226	anti-parallel
Strand 5	L	266	268	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	256	260	first strand
Strand 2	M	249	253	anti-parallel
Strand 3	M	239	244	anti-parallel
Strand 4	M	224	227	anti-parallel
Strand 5	M	265	268	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8W09

Analysis of interatomic Contacts of Structural Units in PDB entry:
8W09