Analysis of interatomic Contacts of Structural Units in PDB entry:
8W0A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W0A entry

There are 4 chains in PDB entry 8W0A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 LYS 68GLY 788
D
 T 1 T 7
A
 LYS 68GLY 788
B
 T 1 T 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 64 helices in PDB entry 8W0A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
77 88Right-handed alpha
Helix 2
AA2
C
93 101Right-handed alpha
Helix 3
AA3
C
103 107Right-handed 310
Helix 4
AA4
C
122 136Right-handed alpha
Helix 5
AA5
C
146 165Right-handed alpha
Helix 6
AA6
C
180 184Right-handed 310
Helix 7
AA7
C
191 203Right-handed alpha
Helix 8
AA8
C
217 222Right-handed 310
Helix 9
AA9
C
227 244Right-handed alpha
Helix 10
AB1
C
270 279Right-handed alpha
Helix 11
AB2
C
325 335Right-handed alpha
Helix 12
AB3
C
346 363Right-handed alpha
Helix 13
AB4
C
386 397Right-handed alpha
Helix 14
AB5
C
403 409Right-handed alpha
Helix 15
AB6
C
421 435Right-handed alpha
Helix 16
AB7
C
444 449Right-handed alpha
Helix 17
AB8
C
470 479Right-handed alpha
Helix 18
AB9
C
500 509Right-handed alpha
Helix 19
AC1
C
528 537Right-handed alpha
Helix 20
AC2
C
546 556Right-handed alpha
Helix 21
AC3
C
557 562Right-handed alpha
Helix 22
AC4
C
584 592Right-handed alpha
Helix 23
AC5
C
612 622Right-handed alpha
Helix 24
AC6
C
624 639Right-handed alpha
Helix 25
AC7
C
647 653Right-handed alpha
Helix 26
AC8
C
668 674Right-handed alpha
Helix 27
AC9
C
677 686Right-handed alpha
Helix 28
AD1
C
710 730Right-handed alpha
Helix 29
AD2
C
733 741Right-handed alpha
Helix 30
AD3
C
744 768Right-handed alpha
Helix 31
AD4
C
771 780Right-handed alpha
Helix 32
AD5
C
781 787Right-handed alpha
Helix 33
AD6
A
77 88Right-handed alpha
Helix 34
AD7
A
93 101Right-handed alpha
Helix 35
AD8
A
103 107Right-handed 310
Helix 36
AD9
A
122 136Right-handed alpha
Helix 37
AE1
A
146 165Right-handed alpha
Helix 38
AE2
A
180 184Right-handed 310
Helix 39
AE3
A
191 203Right-handed alpha
Helix 40
AE4
A
217 222Right-handed 310
Helix 41
AE5
A
227 244Right-handed alpha
Helix 42
AE6
A
270 279Right-handed alpha
Helix 43
AE7
A
325 335Right-handed alpha
Helix 44
AE8
A
346 363Right-handed alpha
Helix 45
AE9
A
386 397Right-handed alpha
Helix 46
AF1
A
403 409Right-handed alpha
Helix 47
AF2
A
421 435Right-handed alpha
Helix 48
AF3
A
444 449Right-handed alpha
Helix 49
AF4
A
470 479Right-handed alpha
Helix 50
AF5
A
500 509Right-handed alpha
Helix 51
AF6
A
528 537Right-handed alpha
Helix 52
AF7
A
546 556Right-handed alpha
Helix 53
AF8
A
557 562Right-handed alpha
Helix 54
AF9
A
584 592Right-handed alpha
Helix 55
AG1
A
612 622Right-handed alpha
Helix 56
AG2
A
624 639Right-handed alpha
Helix 57
AG3
A
647 653Right-handed alpha
Helix 58
AG4
A
668 674Right-handed alpha
Helix 59
AG5
A
677 686Right-handed alpha
Helix 60
AG6
A
710 730Right-handed alpha
Helix 61
AG7
A
733 741Right-handed alpha
Helix 62
AG8
A
744 768Right-handed alpha
Helix 63
AG9
A
771 780Right-handed alpha
Helix 64
AH1
A
781 787Right-handed alpha
Back to top of page

There are 13 sheets in PDB entry 8W0A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
263 264first strand
Strand 2
C
110 114parallel
Strand 3
C
280 284parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
188 189first strand
Strand 2
C
141 143parallel
Strand 3
C
213 215parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
301 304first strand
Strand 2
C
292 298anti-parallel
Strand 3
C
490 493parallel
Strand 4
C
456 458parallel
Strand 5
C
340 342parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
414 415first strand
Strand 2
C
440 441parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
463 464first strand
Strand 2
C
467 468anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
595 596first strand
Strand 2
C
610 611anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
640 643first strand
Strand 2
A
640 643anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 264first strand
Strand 2
A
110 114parallel
Strand 3
A
280 284parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 189first strand
Strand 2
A
141 143parallel
Strand 3
A
213 215parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 304first strand
Strand 2
A
292 298anti-parallel
Strand 3
A
490 493parallel
Strand 4
A
456 458parallel
Strand 5
A
340 342parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 415first strand
Strand 2
A
440 441parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 464first strand
Strand 2
A
467 468anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 596first strand
Strand 2
A
610 611anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il