Analysis of interatomic Contacts of Structural Units in PDB entry:
8W0M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8W0M entry

There are 3 chains in PDB entry 8W0M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 21	LYS 628
B	THR 21	VAL 548
C	GLN 20	LEU 170

There are 62 helices in PDB entry 8W0M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	44	Right-handed alpha
Helix 2	AA2	A	52	66	Right-handed alpha
Helix 3	AA3	A	66	79	Right-handed alpha
Helix 4	AA4	A	107	113	Right-handed alpha
Helix 5	AA5	A	113	120	Right-handed alpha
Helix 6	AA6	A	132	136	Right-handed 310
Helix 7	AA7	A	141	158	Right-handed alpha
Helix 8	AA8	A	173	186	Right-handed alpha
Helix 9	AA9	A	198	210	Right-handed alpha
Helix 10	AB1	A	229	238	Right-handed alpha
Helix 11	AB2	A	267	272	Right-handed alpha
Helix 12	AB3	A	308	322	Right-handed alpha
Helix 13	AB4	A	339	347	Right-handed alpha
Helix 14	AB5	A	347	353	Right-handed alpha
Helix 15	AB6	A	370	380	Right-handed alpha
Helix 16	AB7	A	387	398	Right-handed alpha
Helix 17	AB8	A	399	405	Right-handed 310
Helix 18	AB9	A	421	432	Right-handed alpha
Helix 19	AC1	A	512	520	Right-handed alpha
Helix 20	AC2	A	561	571	Right-handed alpha
Helix 21	AC3	A	610	621	Right-handed alpha
Helix 22	AC4	A	622	626	Right-handed 310
Helix 23	AC5	B	25	29	Right-handed 310
Helix 24	AC6	B	37	44	Right-handed alpha
Helix 25	AC7	B	52	66	Right-handed alpha
Helix 26	AC8	B	66	79	Right-handed alpha
Helix 27	AC9	B	107	113	Right-handed alpha
Helix 28	AD1	B	113	120	Right-handed alpha
Helix 29	AD2	B	132	136	Right-handed 310
Helix 30	AD3	B	141	158	Right-handed alpha
Helix 31	AD4	B	173	186	Right-handed alpha
Helix 32	AD5	B	198	210	Right-handed alpha
Helix 33	AD6	B	229	238	Right-handed alpha
Helix 34	AD7	B	267	272	Right-handed alpha
Helix 35	AD8	B	308	322	Right-handed alpha
Helix 36	AD9	B	339	347	Right-handed alpha
Helix 37	AE1	B	347	353	Right-handed alpha
Helix 38	AE2	B	370	380	Right-handed alpha
Helix 39	AE3	B	387	398	Right-handed alpha
Helix 40	AE4	B	398	405	Right-handed alpha
Helix 41	AE5	B	421	432	Right-handed alpha
Helix 42	AE6	B	512	520	Right-handed alpha
Helix 43	AE7	C	25	29	Right-handed 310
Helix 44	AE8	C	37	44	Right-handed alpha
Helix 45	AE9	C	52	66	Right-handed alpha
Helix 46	AF1	C	66	79	Right-handed alpha
Helix 47	AF2	C	107	113	Right-handed alpha
Helix 48	AF3	C	113	120	Right-handed alpha
Helix 49	AF4	C	132	136	Right-handed 310
Helix 50	AF5	C	141	158	Right-handed alpha
Helix 51	AF6	C	173	186	Right-handed alpha
Helix 52	AF7	C	198	210	Right-handed alpha
Helix 53	AF8	C	229	238	Right-handed alpha
Helix 54	AF9	C	267	272	Right-handed alpha
Helix 55	AG1	C	308	322	Right-handed alpha
Helix 56	AG2	C	339	347	Right-handed alpha
Helix 57	AG3	C	347	353	Right-handed alpha
Helix 58	AG4	C	370	380	Right-handed alpha
Helix 59	AG5	C	387	398	Right-handed alpha
Helix 60	AG6	C	398	403	Right-handed alpha
Helix 61	AG7	C	421	432	Right-handed alpha
Helix 62	AG8	C	512	520	Right-handed alpha

There are 20 sheets in PDB entry 8W0M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	90	first strand
Strand 2	A	99	102	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	106	first strand
Strand 2	A	283	284	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	140	first strand
Strand 2	A	124	129	anti-parallel
Strand 3	A	357	360	parallel
Strand 4	A	331	333	parallel
Strand 5	A	383	386	parallel
Strand 6	A	412	415	parallel
Strand 7	A	438	441	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	266	first strand
Strand 2	A	245	249	parallel
Strand 3	A	213	217	parallel
Strand 4	A	165	169	parallel
Strand 5	A	189	192	parallel
Strand 6	A	290	295	parallel
Strand 7	A	301	306	anti-parallel
Strand 8	A	508	509	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	222	first strand
Strand 2	A	225	228	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	479	first strand
Strand 2	A	492	498	anti-parallel
Strand 3	A	528	536	anti-parallel
Strand 4	A	542	547	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	551	554	first strand
Strand 2	A	557	560	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	574	584	first strand
Strand 2	A	588	597	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	99	102	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	106	first strand
Strand 2	B	283	284	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	140	first strand
Strand 2	B	124	129	anti-parallel
Strand 3	B	357	360	parallel
Strand 4	B	331	333	parallel
Strand 5	B	383	386	parallel
Strand 6	B	412	415	parallel
Strand 7	B	438	441	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	266	first strand
Strand 2	B	245	249	parallel
Strand 3	B	213	217	parallel
Strand 4	B	165	169	parallel
Strand 5	B	189	192	parallel
Strand 6	B	288	294	parallel
Strand 7	B	302	307	anti-parallel
Strand 8	B	508	509	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	222	first strand
Strand 2	B	225	228	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	485	486	first strand
Strand 2	B	476	480	anti-parallel
Strand 3	B	492	498	anti-parallel
Strand 4	B	528	536	anti-parallel
Strand 5	B	542	547	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	90	first strand
Strand 2	C	99	102	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	106	first strand
Strand 2	C	283	284	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	140	first strand
Strand 2	C	124	129	anti-parallel
Strand 3	C	357	360	parallel
Strand 4	C	331	333	parallel
Strand 5	C	383	386	parallel
Strand 6	C	412	416	parallel
Strand 7	C	438	442	parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	266	first strand
Strand 2	C	245	249	parallel
Strand 3	C	213	217	parallel
Strand 4	C	165	169	parallel
Strand 5	C	189	193	parallel
Strand 6	C	290	294	parallel
Strand 7	C	302	306	anti-parallel
Strand 8	C	508	509	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	222	first strand
Strand 2	C	225	228	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	476	479	first strand
Strand 2	C	492	498	anti-parallel
Strand 3	C	528	536	anti-parallel
Strand 4	C	542	547	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8W0M

Analysis of interatomic Contacts of Structural Units in PDB entry:
8W0M