Analysis of interatomic Contacts of Structural Units in PDB entry:
8W0P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8W0P entry

There are 3 chains in PDB entry 8W0P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASP 916
B	MET 1	ASP 916
C	GLY 2	SER 476

There are 95 helices in PDB entry 8W0P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	14	Right-handed alpha
Helix 2	AA2	A	46	62	Right-handed alpha
Helix 3	AA3	A	66	68	Right-handed 310
Helix 4	AA4	A	117	123	Right-handed alpha
Helix 5	AA5	A	123	135	Right-handed alpha
Helix 6	AA6	A	167	172	Right-handed alpha
Helix 7	AA7	A	209	226	Right-handed alpha
Helix 8	AA8	A	233	253	Right-handed alpha
Helix 9	AA9	A	274	291	Right-handed alpha
Helix 10	AB1	A	295	302	Right-handed alpha
Helix 11	AB2	A	312	325	Right-handed alpha
Helix 12	AB3	A	340	353	Right-handed alpha
Helix 13	AB4	A	363	374	Right-handed alpha
Helix 14	AB5	A	375	387	Right-handed alpha
Helix 15	AB6	A	401	416	Right-handed alpha
Helix 16	AB7	A	419	423	Right-handed 310
Helix 17	AB8	A	426	437	Right-handed alpha
Helix 18	AB9	A	442	445	Right-handed 310
Helix 19	AC1	A	446	450	Right-handed alpha
Helix 20	AC2	A	457	472	Right-handed alpha
Helix 21	AC3	A	486	490	Right-handed 310
Helix 22	AC4	A	534	539	Right-handed alpha
Helix 23	AC5	A	540	542	Right-handed 310
Helix 24	AC6	A	549	552	Right-handed 310
Helix 25	AC7	A	553	561	Right-handed alpha
Helix 26	AC8	A	574	579	Right-handed alpha
Helix 27	AC9	A	582	592	Right-handed alpha
Helix 28	AD1	A	602	606	Right-handed 310
Helix 29	AD2	A	623	658	Right-handed alpha
Helix 30	AD3	A	666	676	Right-handed alpha
Helix 31	AD4	A	677	689	Right-handed alpha
Helix 32	AD5	A	694	700	Right-handed 310
Helix 33	AD6	A	703	710	Right-handed alpha
Helix 34	AD7	A	710	718	Right-handed alpha
Helix 35	AD8	A	730	742	Right-handed alpha
Helix 36	AD9	A	781	817	Right-handed alpha
Helix 37	AE1	A	821	860	Right-handed alpha
Helix 38	AE2	A	868	871	Right-handed 310
Helix 39	AE3	A	875	883	Right-handed alpha
Helix 40	AE4	A	904	913	Right-handed alpha
Helix 41	AE5	B	2	14	Right-handed alpha
Helix 42	AE6	B	46	62	Right-handed alpha
Helix 43	AE7	B	66	68	Right-handed 310
Helix 44	AE8	B	108	110	Right-handed 310
Helix 45	AE9	B	111	134	Right-handed alpha
Helix 46	AF1	B	167	175	Right-handed alpha
Helix 47	AF2	B	211	224	Right-handed alpha
Helix 48	AF3	B	232	253	Right-handed alpha
Helix 49	AF4	B	276	287	Right-handed alpha
Helix 50	AF5	B	296	302	Right-handed alpha
Helix 51	AF6	B	312	323	Right-handed alpha
Helix 52	AF7	B	327	332	Right-handed alpha
Helix 53	AF8	B	339	351	Right-handed alpha
Helix 54	AF9	B	363	374	Right-handed alpha
Helix 55	AG1	B	375	388	Right-handed alpha
Helix 56	AG2	B	401	417	Right-handed alpha
Helix 57	AG3	B	426	437	Right-handed alpha
Helix 58	AG4	B	446	451	Right-handed alpha
Helix 59	AG5	B	457	471	Right-handed alpha
Helix 60	AG6	B	535	540	Right-handed alpha
Helix 61	AG7	B	552	561	Right-handed alpha
Helix 62	AG8	B	575	577	Right-handed 310
Helix 63	AG9	B	579	581	Right-handed 310
Helix 64	AH1	B	582	592	Right-handed alpha
Helix 65	AH2	B	623	656	Right-handed alpha
Helix 66	AH3	B	666	675	Right-handed alpha
Helix 67	AH4	B	677	690	Right-handed alpha
Helix 68	AH5	B	694	700	Right-handed alpha
Helix 69	AH6	B	701	710	Right-handed alpha
Helix 70	AH7	B	710	718	Right-handed alpha
Helix 71	AH8	B	730	742	Right-handed alpha
Helix 72	AH9	B	781	816	Right-handed alpha
Helix 73	AI1	B	818	860	Right-handed alpha
Helix 74	AI2	B	867	872	Right-handed alpha
Helix 75	AI3	B	875	883	Right-handed alpha
Helix 76	AI4	B	904	913	Right-handed alpha
Helix 77	AI5	C	10	15	Right-handed 310
Helix 78	AI6	C	37	42	Right-handed alpha
Helix 79	AI7	C	78	82	Right-handed 310
Helix 80	AI8	C	85	95	Right-handed alpha
Helix 81	AI9	C	112	116	Right-handed 310
Helix 82	AJ1	C	143	154	Right-handed alpha
Helix 83	AJ2	C	155	162	Right-handed alpha
Helix 84	AJ3	C	173	180	Right-handed alpha
Helix 85	AJ4	C	184	193	Right-handed alpha
Helix 86	AJ5	C	193	215	Right-handed alpha
Helix 87	AJ6	C	217	231	Right-handed alpha
Helix 88	AJ7	C	233	242	Right-handed alpha
Helix 89	AJ8	C	251	254	Right-handed 310
Helix 90	AJ9	C	263	277	Right-handed alpha
Helix 91	AK1	C	312	316	Right-handed 310
Helix 92	AK2	C	389	399	Right-handed alpha
Helix 93	AK3	C	399	410	Right-handed alpha
Helix 94	AK4	C	421	428	Right-handed alpha
Helix 95	AK5	C	434	476	Right-handed alpha

There are 26 sheets in PDB entry 8W0P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	23	first strand
Strand 2	A	28	31	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	71	first strand
Strand 2	A	91	94	anti-parallel
Strand 3	A	100	104	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	88	89	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	80	first strand
Strand 2	A	83	85	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	149	first strand
Strand 2	A	152	160	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	478	479	first strand
Strand 2	A	451	454	parallel
Strand 3	A	393	395	parallel
Strand 4	A	517	520	parallel
Strand 5	A	562	568	parallel
Strand 6	A	614	621	anti-parallel
Strand 7	A	571	573	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	478	479	first strand
Strand 2	A	451	454	parallel
Strand 3	A	393	395	parallel
Strand 4	A	517	520	parallel
Strand 5	A	562	568	parallel
Strand 6	A	614	621	anti-parallel
Strand 7	A	593	600	anti-parallel
Strand 8	A	745	750	parallel
Strand 9	C	7	8	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	503	504	first strand
Strand 2	A	512	513	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	773	775	first strand
Strand 2	A	892	895	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	861	862	first strand
Strand 2	A	865	866	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	23	first strand
Strand 2	B	28	31	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	71	first strand
Strand 2	B	91	94	anti-parallel
Strand 3	B	100	105	anti-parallel
Strand 4	B	140	149	parallel
Strand 5	B	152	161	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	75	first strand
Strand 2	B	88	89	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	80	first strand
Strand 2	B	83	85	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	394	first strand
Strand 2	B	517	522	parallel
Strand 3	B	562	573	parallel
Strand 4	B	614	621	anti-parallel
Strand 5	B	593	600	anti-parallel
Strand 6	B	745	750	parallel
Strand 7	C	245	249	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	454	first strand
Strand 2	B	478	479	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	503	504	first strand
Strand 2	B	512	513	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	756	758	first strand
Strand 2	B	763	765	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	861	862	first strand
Strand 2	B	865	866	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	36	first strand
Strand 2	C	182	183	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	75	77	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	121	first strand
Strand 2	C	105	109	anti-parallel
Strand 3	C	135	138	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	285	first strand
Strand 2	C	429	431	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	295	first strand
Strand 2	C	379	383	anti-parallel
Strand 3	C	347	349	anti-parallel
Strand 4	C	361	363	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	310	first strand
Strand 2	C	328	330	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	353	first strand
Strand 2	C	418	419	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8W0P

Analysis of interatomic Contacts of Structural Units in PDB entry:
8W0P