Analysis of interatomic Contacts of Structural Units in PDB entry:
8W0T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8W0T entry

There are 4 chains in PDB entry 8W0T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 33	LYS 430
B	GLU 33	LYS 430
C	GLU 33	LYS 430
D	GLU 33	LYS 430

There are 68 helices in PDB entry 8W0T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	41	Right-handed 310
Helix 2	AA2	A	54	72	Right-handed alpha
Helix 3	AA3	A	72	83	Right-handed alpha
Helix 4	AA4	A	86	96	Right-handed alpha
Helix 5	AA5	A	104	108	Right-handed 310
Helix 6	AA6	A	113	128	Right-handed alpha
Helix 7	AA7	A	133	140	Right-handed alpha
Helix 8	AA8	A	140	149	Right-handed alpha
Helix 9	AA9	A	150	163	Right-handed alpha
Helix 10	AB1	A	225	228	Right-handed 310
Helix 11	AB2	A	269	271	Right-handed 310
Helix 12	AB3	A	279	317	Right-handed alpha
Helix 13	AB4	A	327	357	Right-handed alpha
Helix 14	AB5	A	361	387	Right-handed alpha
Helix 15	AB6	A	388	393	Right-handed 310
Helix 16	AB7	A	396	406	Right-handed alpha
Helix 17	AB8	A	414	428	Right-handed alpha
Helix 18	AB9	B	54	72	Right-handed alpha
Helix 19	AC1	B	72	83	Right-handed alpha
Helix 20	AC2	B	86	97	Right-handed alpha
Helix 21	AC3	B	104	108	Right-handed 310
Helix 22	AC4	B	113	127	Right-handed alpha
Helix 23	AC5	B	133	140	Right-handed alpha
Helix 24	AC6	B	140	149	Right-handed alpha
Helix 25	AC7	B	150	163	Right-handed alpha
Helix 26	AC8	B	225	228	Right-handed 310
Helix 27	AC9	B	280	315	Right-handed alpha
Helix 28	AD1	B	327	356	Right-handed alpha
Helix 29	AD2	B	361	388	Right-handed alpha
Helix 30	AD3	B	389	393	Right-handed 310
Helix 31	AD4	B	396	406	Right-handed alpha
Helix 32	AD5	B	414	428	Right-handed alpha
Helix 33	AD6	C	37	41	Right-handed 310
Helix 34	AD7	C	54	71	Right-handed alpha
Helix 35	AD8	C	72	74	Right-handed 310
Helix 36	AD9	C	75	83	Right-handed alpha
Helix 37	AE1	C	86	96	Right-handed alpha
Helix 38	AE2	C	104	108	Right-handed 310
Helix 39	AE3	C	113	127	Right-handed alpha
Helix 40	AE4	C	133	139	Right-handed alpha
Helix 41	AE5	C	140	149	Right-handed alpha
Helix 42	AE6	C	150	163	Right-handed alpha
Helix 43	AE7	C	180	184	Right-handed 310
Helix 44	AE8	C	225	228	Right-handed 310
Helix 45	AE9	C	269	271	Right-handed 310
Helix 46	AF1	C	279	317	Right-handed alpha
Helix 47	AF2	C	327	357	Right-handed alpha
Helix 48	AF3	C	361	387	Right-handed alpha
Helix 49	AF4	C	388	393	Right-handed 310
Helix 50	AF5	C	396	407	Right-handed alpha
Helix 51	AF6	C	414	428	Right-handed alpha
Helix 52	AF7	D	54	72	Right-handed alpha
Helix 53	AF8	D	75	83	Right-handed alpha
Helix 54	AF9	D	86	96	Right-handed alpha
Helix 55	AG1	D	104	108	Right-handed 310
Helix 56	AG2	D	113	127	Right-handed alpha
Helix 57	AG3	D	133	140	Right-handed alpha
Helix 58	AG4	D	140	149	Right-handed alpha
Helix 59	AG5	D	150	163	Right-handed alpha
Helix 60	AG6	D	180	184	Right-handed 310
Helix 61	AG7	D	225	228	Right-handed 310
Helix 62	AG8	D	269	271	Right-handed 310
Helix 63	AG9	D	279	317	Right-handed alpha
Helix 64	AH1	D	327	357	Right-handed alpha
Helix 65	AH2	D	361	386	Right-handed alpha
Helix 66	AH3	D	387	393	Right-handed 310
Helix 67	AH4	D	396	406	Right-handed alpha
Helix 68	AH5	D	414	428	Right-handed alpha

There are 12 sheets in PDB entry 8W0T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	171	first strand
Strand 2	A	212	218	parallel
Strand 3	A	230	236	anti-parallel
Strand 4	A	273	274	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	191	first strand
Strand 2	A	194	204	anti-parallel
Strand 3	A	259	268	anti-parallel
Strand 4	A	242	247	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	319	first strand
Strand 2	A	322	323	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	171	first strand
Strand 2	B	212	218	parallel
Strand 3	B	230	236	anti-parallel
Strand 4	B	273	274	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	191	first strand
Strand 2	B	194	204	anti-parallel
Strand 3	B	259	268	anti-parallel
Strand 4	B	242	247	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	319	first strand
Strand 2	B	322	323	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	171	first strand
Strand 2	C	212	218	parallel
Strand 3	C	230	236	anti-parallel
Strand 4	C	273	274	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	191	first strand
Strand 2	C	194	204	anti-parallel
Strand 3	C	259	268	anti-parallel
Strand 4	C	242	247	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	319	first strand
Strand 2	C	322	323	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	171	first strand
Strand 2	D	212	218	parallel
Strand 3	D	230	236	anti-parallel
Strand 4	D	273	274	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	191	first strand
Strand 2	D	194	204	anti-parallel
Strand 3	D	259	268	anti-parallel
Strand 4	D	242	247	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	319	first strand
Strand 2	D	322	323	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8W0T

Analysis of interatomic Contacts of Structural Units in PDB entry:
8W0T