Analysis of interatomic Contacts of Structural Units in PDB entry:
8W0U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8W0U entry

There are 4 chains in PDB entry 8W0U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 33	LYS 430
B	GLU 33	ASP 429
C	GLU 33	ASP 429
D	GLU 33	LYS 430

There are 66 helices in PDB entry 8W0U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	54	72	Right-handed alpha
Helix 2	AA2	A	75	83	Right-handed alpha
Helix 3	AA3	A	86	96	Right-handed alpha
Helix 4	AA4	A	104	108	Right-handed 310
Helix 5	AA5	A	113	127	Right-handed alpha
Helix 6	AA6	A	133	140	Right-handed alpha
Helix 7	AA7	A	140	149	Right-handed alpha
Helix 8	AA8	A	150	163	Right-handed alpha
Helix 9	AA9	A	180	184	Right-handed 310
Helix 10	AB1	A	225	228	Right-handed 310
Helix 11	AB2	A	279	316	Right-handed alpha
Helix 12	AB3	A	327	357	Right-handed alpha
Helix 13	AB4	A	361	388	Right-handed alpha
Helix 14	AB5	A	389	393	Right-handed 310
Helix 15	AB6	A	396	406	Right-handed alpha
Helix 16	AB7	A	414	428	Right-handed alpha
Helix 17	AB8	B	54	72	Right-handed alpha
Helix 18	AB9	B	75	83	Right-handed alpha
Helix 19	AC1	B	86	96	Right-handed alpha
Helix 20	AC2	B	113	128	Right-handed alpha
Helix 21	AC3	B	133	140	Right-handed alpha
Helix 22	AC4	B	140	149	Right-handed alpha
Helix 23	AC5	B	150	163	Right-handed alpha
Helix 24	AC6	B	180	184	Right-handed 310
Helix 25	AC7	B	269	273	Right-handed 310
Helix 26	AC8	B	279	316	Right-handed alpha
Helix 27	AC9	B	327	357	Right-handed alpha
Helix 28	AD1	B	361	388	Right-handed alpha
Helix 29	AD2	B	389	393	Right-handed 310
Helix 30	AD3	B	396	406	Right-handed alpha
Helix 31	AD4	B	414	428	Right-handed alpha
Helix 32	AD5	C	37	41	Right-handed 310
Helix 33	AD6	C	54	72	Right-handed alpha
Helix 34	AD7	C	75	83	Right-handed alpha
Helix 35	AD8	C	86	97	Right-handed alpha
Helix 36	AD9	C	104	108	Right-handed 310
Helix 37	AE1	C	113	127	Right-handed alpha
Helix 38	AE2	C	133	140	Right-handed alpha
Helix 39	AE3	C	140	148	Right-handed alpha
Helix 40	AE4	C	150	163	Right-handed alpha
Helix 41	AE5	C	180	184	Right-handed 310
Helix 42	AE6	C	225	228	Right-handed 310
Helix 43	AE7	C	269	271	Right-handed 310
Helix 44	AE8	C	279	317	Right-handed alpha
Helix 45	AE9	C	327	357	Right-handed alpha
Helix 46	AF1	C	361	386	Right-handed alpha
Helix 47	AF2	C	387	393	Right-handed 310
Helix 48	AF3	C	396	404	Right-handed alpha
Helix 49	AF4	C	414	428	Right-handed alpha
Helix 50	AF5	D	37	41	Right-handed 310
Helix 51	AF6	D	54	72	Right-handed alpha
Helix 52	AF7	D	72	83	Right-handed alpha
Helix 53	AF8	D	87	97	Right-handed alpha
Helix 54	AF9	D	113	118	Right-handed alpha
Helix 55	AG1	D	118	126	Right-handed alpha
Helix 56	AG2	D	134	139	Right-handed alpha
Helix 57	AG3	D	140	149	Right-handed alpha
Helix 58	AG4	D	150	164	Right-handed alpha
Helix 59	AG5	D	225	228	Right-handed 310
Helix 60	AG6	D	279	286	Right-handed alpha
Helix 61	AG7	D	287	317	Right-handed alpha
Helix 62	AG8	D	327	357	Right-handed alpha
Helix 63	AG9	D	361	388	Right-handed alpha
Helix 64	AH1	D	389	392	Right-handed 310
Helix 65	AH2	D	396	405	Right-handed alpha
Helix 66	AH3	D	414	428	Right-handed alpha

There are 11 sheets in PDB entry 8W0U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	171	first strand
Strand 2	A	212	218	parallel
Strand 3	A	230	236	anti-parallel
Strand 4	A	273	274	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	191	first strand
Strand 2	A	194	204	anti-parallel
Strand 3	A	259	268	anti-parallel
Strand 4	A	242	247	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	319	first strand
Strand 2	A	322	323	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	171	first strand
Strand 2	B	212	218	parallel
Strand 3	B	230	236	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	191	first strand
Strand 2	B	194	204	anti-parallel
Strand 3	B	259	268	anti-parallel
Strand 4	B	242	247	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	171	first strand
Strand 2	C	212	218	parallel
Strand 3	C	230	236	anti-parallel
Strand 4	C	273	274	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	191	first strand
Strand 2	C	194	205	anti-parallel
Strand 3	C	258	268	anti-parallel
Strand 4	C	242	247	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	319	first strand
Strand 2	C	322	323	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	171	first strand
Strand 2	D	212	218	parallel
Strand 3	D	230	236	anti-parallel
Strand 4	D	273	274	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	191	first strand
Strand 2	D	194	204	anti-parallel
Strand 3	D	259	268	anti-parallel
Strand 4	D	242	247	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	319	first strand
Strand 2	D	322	323	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8W0U

Analysis of interatomic Contacts of Structural Units in PDB entry:
8W0U