Analysis of interatomic Contacts of Structural Units in PDB entry:
8W12

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8W12 entry

There are 6 chains in PDB entry 8W12 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 24	MET 892
B	ILE 12	THR 894
C	ALA 4	LEU 329
D	SER 24	MET 892
E	ILE 12	THR 894
F	ALA 4	LEU 329

There are142 helices in PDB entry 8W12. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	48	Right-handed alpha
Helix 2	AA2	A	63	77	Right-handed alpha
Helix 3	AA3	A	106	113	Right-handed alpha
Helix 4	AA4	A	122	141	Right-handed alpha
Helix 5	AA5	A	176	189	Right-handed alpha
Helix 6	AA6	A	210	228	Right-handed alpha
Helix 7	AA7	A	230	246	Right-handed alpha
Helix 8	AA8	A	251	257	Right-handed alpha
Helix 9	AA9	A	284	297	Right-handed alpha
Helix 10	AB1	A	306	317	Right-handed alpha
Helix 11	AB2	A	322	327	Right-handed 310
Helix 12	AB3	A	333	349	Right-handed alpha
Helix 13	AB4	A	366	381	Right-handed alpha
Helix 14	AB5	A	391	408	Right-handed alpha
Helix 15	AB6	A	436	440	Right-handed 310
Helix 16	AB7	A	494	507	Right-handed alpha
Helix 17	AB8	A	509	537	Right-handed alpha
Helix 18	AB9	A	545	559	Right-handed alpha
Helix 19	AC1	A	572	582	Right-handed alpha
Helix 20	AC2	A	595	624	Right-handed alpha
Helix 21	AC3	A	632	643	Right-handed alpha
Helix 22	AC4	A	645	653	Right-handed alpha
Helix 23	AC5	A	663	672	Right-handed alpha
Helix 24	AC6	A	678	691	Right-handed alpha
Helix 25	AC7	A	692	693	Right-handed 310
Helix 26	AC8	A	694	697	Right-handed 310
Helix 27	AC9	A	717	724	Right-handed alpha
Helix 28	AD1	A	745	756	Right-handed alpha
Helix 29	AD2	A	757	768	Right-handed alpha
Helix 30	AD3	A	791	796	Right-handed alpha
Helix 31	AD4	A	829	835	Right-handed 310
Helix 32	AD5	A	864	868	Right-handed 310
Helix 33	AD6	A	885	890	Right-handed alpha
Helix 34	AD7	B	30	49	Right-handed alpha
Helix 35	AD8	B	64	76	Right-handed alpha
Helix 36	AD9	B	106	115	Right-handed alpha
Helix 37	AE1	B	122	142	Right-handed alpha
Helix 38	AE2	B	161	164	Right-handed 310
Helix 39	AE3	B	171	175	Right-handed 310
Helix 40	AE4	B	176	189	Right-handed alpha
Helix 41	AE5	B	210	226	Right-handed alpha
Helix 42	AE6	B	228	246	Right-handed alpha
Helix 43	AE7	B	254	260	Right-handed 310
Helix 44	AE8	B	275	280	Right-handed alpha
Helix 45	AE9	B	284	297	Right-handed alpha
Helix 46	AF1	B	313	318	Right-handed alpha
Helix 47	AF2	B	322	328	Right-handed alpha
Helix 48	AF3	B	333	349	Right-handed alpha
Helix 49	AF4	B	366	381	Right-handed alpha
Helix 50	AF5	B	391	407	Right-handed alpha
Helix 51	AF6	B	437	440	Right-handed 310
Helix 52	AF7	B	494	508	Right-handed alpha
Helix 53	AF8	B	509	537	Right-handed alpha
Helix 54	AF9	B	545	559	Right-handed alpha
Helix 55	AG1	B	573	581	Right-handed alpha
Helix 56	AG2	B	595	624	Right-handed alpha
Helix 57	AG3	B	632	643	Right-handed alpha
Helix 58	AG4	B	645	659	Right-handed alpha
Helix 59	AG5	B	662	672	Right-handed alpha
Helix 60	AG6	B	678	691	Right-handed alpha
Helix 61	AG7	B	694	697	Right-handed 310
Helix 62	AG8	B	717	725	Right-handed alpha
Helix 63	AG9	B	745	756	Right-handed alpha
Helix 64	AH1	B	757	768	Right-handed alpha
Helix 65	AH2	B	791	796	Right-handed alpha
Helix 66	AH3	B	830	839	Right-handed 310
Helix 67	AH4	B	864	866	Right-handed 310
Helix 68	AH5	B	885	893	Right-handed alpha
Helix 69	AH6	C	9	16	Right-handed alpha
Helix 70	AH7	C	16	23	Right-handed alpha
Helix 71	AH8	C	276	281	Right-handed 310
Helix 72	AH9	C	294	305	Right-handed alpha
Helix 73	AI1	C	317	328	Right-handed alpha
Helix 74	AI2	D	27	48	Right-handed alpha
Helix 75	AI3	D	63	77	Right-handed alpha
Helix 76	AI4	D	106	112	Right-handed alpha
Helix 77	AI5	D	122	141	Right-handed alpha
Helix 78	AI6	D	176	188	Right-handed alpha
Helix 79	AI7	D	210	228	Right-handed alpha
Helix 80	AI8	D	230	246	Right-handed alpha
Helix 81	AI9	D	252	257	Right-handed alpha
Helix 82	AJ1	D	274	280	Right-handed alpha
Helix 83	AJ2	D	284	297	Right-handed alpha
Helix 84	AJ3	D	306	317	Right-handed alpha
Helix 85	AJ4	D	322	326	Right-handed 310
Helix 86	AJ5	D	333	349	Right-handed alpha
Helix 87	AJ6	D	366	381	Right-handed alpha
Helix 88	AJ7	D	391	409	Right-handed alpha
Helix 89	AJ8	D	436	440	Right-handed 310
Helix 90	AJ9	D	494	507	Right-handed alpha
Helix 91	AK1	D	509	537	Right-handed alpha
Helix 92	AK2	D	545	559	Right-handed alpha
Helix 93	AK3	D	573	582	Right-handed alpha
Helix 94	AK4	D	595	624	Right-handed alpha
Helix 95	AK5	D	632	643	Right-handed alpha
Helix 96	AK6	D	645	653	Right-handed alpha
Helix 97	AK7	D	663	672	Right-handed alpha
Helix 98	AK8	D	678	691	Right-handed alpha
Helix 99	AK9	D	717	724	Right-handed alpha
Helix 100	AL1	D	745	756	Right-handed alpha
Helix 101	AL2	D	757	767	Right-handed alpha
Helix 102	AL3	D	791	796	Right-handed alpha
Helix 103	AL4	D	830	839	Right-handed 310
Helix 104	AL5	D	885	890	Right-handed alpha
Helix 105	AL6	E	30	49	Right-handed alpha
Helix 106	AL7	E	64	76	Right-handed alpha
Helix 107	AL8	E	106	113	Right-handed alpha
Helix 108	AL9	E	122	141	Right-handed alpha
Helix 109	AM1	E	161	164	Right-handed 310
Helix 110	AM2	E	171	175	Right-handed 310
Helix 111	AM3	E	176	188	Right-handed alpha
Helix 112	AM4	E	210	226	Right-handed alpha
Helix 113	AM5	E	228	246	Right-handed alpha
Helix 114	AM6	E	254	259	Right-handed alpha
Helix 115	AM7	E	275	280	Right-handed alpha
Helix 116	AM8	E	284	297	Right-handed alpha
Helix 117	AM9	E	313	318	Right-handed alpha
Helix 118	AN1	E	322	328	Right-handed alpha
Helix 119	AN2	E	333	349	Right-handed alpha
Helix 120	AN3	E	366	381	Right-handed alpha
Helix 121	AN4	E	391	407	Right-handed alpha
Helix 122	AN5	E	435	440	Right-handed 310
Helix 123	AN6	E	494	508	Right-handed alpha
Helix 124	AN7	E	510	538	Right-handed alpha
Helix 125	AN8	E	545	559	Right-handed alpha
Helix 126	AN9	E	574	582	Right-handed alpha
Helix 127	AO1	E	595	624	Right-handed alpha
Helix 128	AO2	E	632	643	Right-handed alpha
Helix 129	AO3	E	645	659	Right-handed alpha
Helix 130	AO4	E	662	671	Right-handed alpha
Helix 131	AO5	E	678	691	Right-handed alpha
Helix 132	AO6	E	717	724	Right-handed alpha
Helix 133	AO7	E	745	756	Right-handed alpha
Helix 134	AO8	E	757	768	Right-handed alpha
Helix 135	AO9	E	791	796	Right-handed alpha
Helix 136	AP1	E	830	839	Right-handed 310
Helix 137	AP2	E	864	870	Right-handed 310
Helix 138	AP3	E	886	892	Right-handed alpha
Helix 139	AP4	F	9	23	Right-handed alpha
Helix 140	AP5	F	275	279	Right-handed 310
Helix 141	AP6	F	294	305	Right-handed alpha
Helix 142	AP7	F	317	329	Right-handed alpha

There are 51 sheets in PDB entry 8W12. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	26	first strand
Strand 2	A	299	302	anti-parallel
Strand 3	A	584	588	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	144	145	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	94	first strand
Strand 2	A	100	105	anti-parallel
Strand 3	A	858	862	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	153	first strand
Strand 2	A	156	159	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	196	first strand
Strand 2	A	201	207	anti-parallel
Strand 3	A	872	876	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	265	first strand
Strand 2	A	882	884	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	357	first strand
Strand 2	A	567	571	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	418	first strand
Strand 2	A	427	429	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	699	700	first strand
Strand 2	A	779	786	anti-parallel
Strand 3	A	821	826	parallel
Strand 4	A	728	729	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	741	744	first strand
Strand 2	A	771	774	parallel
Strand 3	A	703	709	anti-parallel
Strand 4	A	846	851	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	800	804	first strand
Strand 2	A	813	817	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	19	first strand
Strand 2	B	22	24	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	144	145	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	93	first strand
Strand 2	B	100	105	anti-parallel
Strand 3	B	858	862	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	153	first strand
Strand 2	B	156	159	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	207	first strand
Strand 2	B	872	876	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	303	first strand
Strand 2	B	583	588	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	357	first strand
Strand 2	B	567	571	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	418	first strand
Strand 2	B	427	429	anti-parallel
Strand 3	B	434	435	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	458	first strand
Strand 2	B	471	472	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	699	700	first strand
Strand 2	B	779	786	anti-parallel
Strand 3	B	821	826	parallel
Strand 4	B	728	729	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	741	744	first strand
Strand 2	B	771	774	parallel
Strand 3	B	703	709	anti-parallel
Strand 4	B	846	851	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	801	804	first strand
Strand 2	B	813	816	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	28	first strand
Strand 2	C	271	273	parallel
Strand 3	C	5	7	parallel
Strand 4	C	284	287	parallel
Strand 5	C	309	312	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	26	first strand
Strand 2	D	300	302	anti-parallel
Strand 3	D	584	585	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	83	first strand
Strand 2	D	144	145	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	94	first strand
Strand 2	D	101	105	anti-parallel
Strand 3	D	858	861	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	153	first strand
Strand 2	D	156	159	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	193	197	first strand
Strand 2	D	200	207	anti-parallel
Strand 3	D	872	876	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	263	265	first strand
Strand 2	D	882	884	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	357	first strand
Strand 2	D	567	571	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	416	417	first strand
Strand 2	D	428	429	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	457	458	first strand
Strand 2	D	471	472	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	699	700	first strand
Strand 2	D	779	786	anti-parallel
Strand 3	D	821	826	parallel
Strand 4	D	728	729	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	741	744	first strand
Strand 2	D	771	774	parallel
Strand 3	D	703	709	anti-parallel
Strand 4	D	846	851	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	801	803	first strand
Strand 2	D	814	816	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	19	first strand
Strand 2	E	22	24	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	82	83	first strand
Strand 2	E	144	145	parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	166	167	first strand
Strand 2	E	90	93	parallel
Strand 3	E	100	105	anti-parallel
Strand 4	E	858	862	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	152	first strand
Strand 2	E	157	159	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	203	207	first strand
Strand 2	E	872	876	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	264	266	first strand
Strand 2	E	883	885	parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	299	303	first strand
Strand 2	E	583	588	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	353	357	first strand
Strand 2	E	567	571	parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	416	418	first strand
Strand 2	E	427	429	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	457	459	first strand
Strand 2	E	470	472	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	699	700	first strand
Strand 2	E	779	786	anti-parallel
Strand 3	E	821	827	parallel
Strand 4	E	727	729	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	741	744	first strand
Strand 2	E	771	774	parallel
Strand 3	E	703	709	anti-parallel
Strand 4	E	846	851	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	801	804	first strand
Strand 2	E	813	816	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	7	first strand
Strand 2	F	271	273	parallel
Strand 3	F	26	28	parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	284	287	first strand
Strand 2	F	309	312	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8W12

Analysis of interatomic Contacts of Structural Units in PDB entry:
8W12