Analysis of interatomic Contacts of Structural Units in PDB entry:
8W1K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W1K entry

There are 3 chains in PDB entry 8W1K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 9SER 428
B
 ASN 8SER 428
C
 ASN 8VAL 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 8W1K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 23Right-handed alpha
Helix 2
AA2
A
25 34Right-handed alpha
Helix 3
AA3
A
57 66Right-handed alpha
Helix 4
AA4
A
78 86Right-handed alpha
Helix 5
AA5
A
90 94Right-handed 310
Helix 6
AA6
A
95 111Right-handed alpha
Helix 7
AA7
A
112 133Right-handed alpha
Helix 8
AA8
A
141 158Right-handed alpha
Helix 9
AA9
A
162 180Right-handed alpha
Helix 10
AB1
A
185 209Right-handed alpha
Helix 11
AB2
A
218 225Right-handed alpha
Helix 12
AB3
A
235 245Right-handed alpha
Helix 13
AB4
A
247 267Right-handed alpha
Helix 14
AB5
A
267 277Right-handed alpha
Helix 15
AB6
A
280 294Right-handed alpha
Helix 16
AB7
A
325 330Right-handed alpha
Helix 17
AB8
A
342 347Right-handed 310
Helix 18
AB9
A
351 356Right-handed alpha
Helix 19
AC1
A
377 394Right-handed alpha
Helix 20
AC2
A
402 407Right-handed alpha
Helix 21
AC3
B
15 23Right-handed alpha
Helix 22
AC4
B
25 34Right-handed alpha
Helix 23
AC5
B
57 66Right-handed alpha
Helix 24
AC6
B
78 86Right-handed alpha
Helix 25
AC7
B
90 94Right-handed 310
Helix 26
AC8
B
95 111Right-handed alpha
Helix 27
AC9
B
112 133Right-handed alpha
Helix 28
AD1
B
141 158Right-handed alpha
Helix 29
AD2
B
162 178Right-handed alpha
Helix 30
AD3
B
185 209Right-handed alpha
Helix 31
AD4
B
218 225Right-handed alpha
Helix 32
AD5
B
235 245Right-handed alpha
Helix 33
AD6
B
247 252Right-handed alpha
Helix 34
AD7
B
252 267Right-handed alpha
Helix 35
AD8
B
267 277Right-handed alpha
Helix 36
AD9
B
280 294Right-handed alpha
Helix 37
AE1
B
325 330Right-handed alpha
Helix 38
AE2
B
342 347Right-handed 310
Helix 39
AE3
B
351 356Right-handed alpha
Helix 40
AE4
B
377 394Right-handed alpha
Helix 41
AE5
B
402 407Right-handed alpha
Helix 42
AE6
C
16 23Right-handed alpha
Helix 43
AE7
C
25 34Right-handed alpha
Helix 44
AE8
C
57 66Right-handed alpha
Helix 45
AE9
C
78 86Right-handed alpha
Helix 46
AF1
C
90 94Right-handed 310
Helix 47
AF2
C
95 111Right-handed alpha
Helix 48
AF3
C
112 133Right-handed alpha
Helix 49
AF4
C
141 158Right-handed alpha
Helix 50
AF5
C
162 180Right-handed alpha
Helix 51
AF6
C
185 209Right-handed alpha
Helix 52
AF7
C
218 225Right-handed alpha
Helix 53
AF8
C
235 245Right-handed alpha
Helix 54
AF9
C
247 267Right-handed alpha
Helix 55
AG1
C
267 277Right-handed alpha
Helix 56
AG2
C
280 294Right-handed alpha
Helix 57
AG3
C
325 330Right-handed alpha
Helix 58
AG4
C
342 347Right-handed 310
Helix 59
AG5
C
351 356Right-handed alpha
Helix 60
AG6
C
377 394Right-handed alpha
Helix 61
AG7
C
402 407Right-handed alpha
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There are 9 sheets in PDB entry 8W1K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
44 48parallel
Strand 3
A
51 56anti-parallel
Strand 4
A
320 324parallel
Strand 5
A
299 304anti-parallel
Strand 6
A
71 72anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
422 425anti-parallel
Strand 3
A
397 399anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 310first strand
Strand 2
A
313 315anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
44 48parallel
Strand 3
B
51 56anti-parallel
Strand 4
B
320 324parallel
Strand 5
B
299 304anti-parallel
Strand 6
B
71 72anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 140first strand
Strand 2
B
422 425anti-parallel
Strand 3
B
397 399anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 310first strand
Strand 2
B
313 315anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 14first strand
Strand 2
C
44 48parallel
Strand 3
C
51 56anti-parallel
Strand 4
C
320 324parallel
Strand 5
C
299 304anti-parallel
Strand 6
C
71 72anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
139 140first strand
Strand 2
C
422 424anti-parallel
Strand 3
C
398 399anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
308 310first strand
Strand 2
C
313 315anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il