Analysis of interatomic Contacts of Structural Units in PDB entry:
8W1M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8W1M entry

There are 2 chains in PDB entry 8W1M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	ASP 382
B	MET 1	ASP 382

There are 35 helices in PDB entry 8W1M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	55	Right-handed alpha
Helix 2	AA2	A	68	71	Right-handed 310
Helix 3	AA3	A	75	78	Right-handed 310
Helix 4	AA4	A	79	85	Right-handed alpha
Helix 5	AA5	A	108	129	Right-handed alpha
Helix 6	AA6	A	144	158	Right-handed alpha
Helix 7	AA7	A	168	176	Right-handed alpha
Helix 8	AA8	A	177	181	Right-handed 310
Helix 9	AA9	A	220	241	Right-handed alpha
Helix 10	AB1	A	243	246	Right-handed 310
Helix 11	AB2	A	247	265	Right-handed alpha
Helix 12	AB3	A	296	309	Right-handed alpha
Helix 13	AB4	A	310	322	Right-handed alpha
Helix 14	AB5	A	324	328	Right-handed 310
Helix 15	AB6	A	335	339	Right-handed 310
Helix 16	AB7	A	340	352	Right-handed alpha
Helix 17	AB8	A	363	377	Right-handed alpha
Helix 18	AB9	B	50	56	Right-handed alpha
Helix 19	AC1	B	68	71	Right-handed 310
Helix 20	AC2	B	75	78	Right-handed 310
Helix 21	AC3	B	79	84	Right-handed alpha
Helix 22	AC4	B	108	129	Right-handed alpha
Helix 23	AC5	B	144	158	Right-handed alpha
Helix 24	AC6	B	168	176	Right-handed alpha
Helix 25	AC7	B	177	181	Right-handed 310
Helix 26	AC8	B	220	241	Right-handed alpha
Helix 27	AC9	B	243	246	Right-handed 310
Helix 28	AD1	B	247	265	Right-handed alpha
Helix 29	AD2	B	296	303	Right-handed alpha
Helix 30	AD3	B	303	309	Right-handed alpha
Helix 31	AD4	B	310	322	Right-handed alpha
Helix 32	AD5	B	324	328	Right-handed 310
Helix 33	AD6	B	335	339	Right-handed 310
Helix 34	AD7	B	340	352	Right-handed alpha
Helix 35	AD8	B	363	377	Right-handed alpha

There are 12 sheets in PDB entry 8W1M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	13	20	anti-parallel
Strand 3	A	36	37	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	13	20	anti-parallel
Strand 3	A	5	9	anti-parallel
Strand 4	A	134	139	parallel
Strand 5	A	161	167	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	49	first strand
Strand 2	A	39	41	anti-parallel
Strand 3	A	64	66	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	92	first strand
Strand 2	A	98	102	anti-parallel
Strand 3	A	105	107	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	216	first strand
Strand 2	A	196	204	anti-parallel
Strand 3	A	184	191	anti-parallel
Strand 4	A	330	334	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	280	first strand
Strand 2	A	287	295	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	26	first strand
Strand 2	B	13	20	anti-parallel
Strand 3	B	36	37	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	26	first strand
Strand 2	B	13	20	anti-parallel
Strand 3	B	5	9	anti-parallel
Strand 4	B	134	139	parallel
Strand 5	B	161	167	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	49	first strand
Strand 2	B	39	41	anti-parallel
Strand 3	B	64	66	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	92	first strand
Strand 2	B	98	102	anti-parallel
Strand 3	B	105	107	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	216	first strand
Strand 2	B	196	204	anti-parallel
Strand 3	B	184	191	anti-parallel
Strand 4	B	330	334	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	280	first strand
Strand 2	B	287	295	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8W1M

Analysis of interatomic Contacts of Structural Units in PDB entry:
8W1M