Analysis of interatomic Contacts of Structural Units in PDB entry:
8W1X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8W1X entry

There are 3 chains in PDB entry 8W1X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 24	ARG 740
B	GLY 24	ALA 106
B	HIS 108	ARG 740

There are 90 helices in PDB entry 8W1X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	32	Right-handed 310
Helix 2	AA2	A	34	39	Right-handed alpha
Helix 3	AA3	A	44	50	Right-handed 310
Helix 4	AA4	A	52	56	Right-handed 310
Helix 5	AA5	A	63	69	Right-handed alpha
Helix 6	AA6	A	72	86	Right-handed alpha
Helix 7	AA7	A	93	97	Right-handed 310
Helix 8	AA8	A	98	111	Right-handed alpha
Helix 9	AA9	A	125	129	Right-handed 310
Helix 10	AB1	A	131	139	Right-handed 310
Helix 11	AB2	A	140	148	Right-handed alpha
Helix 12	AB3	A	148	156	Right-handed alpha
Helix 13	AB4	A	157	159	Right-handed 310
Helix 14	AB5	A	160	176	Right-handed alpha
Helix 15	AB6	A	234	238	Right-handed 310
Helix 16	AB7	A	240	255	Right-handed alpha
Helix 17	AB8	A	258	271	Right-handed alpha
Helix 18	AB9	A	280	284	Right-handed 310
Helix 19	AC1	A	287	291	Right-handed 310
Helix 20	AC2	A	292	296	Right-handed 310
Helix 21	AC3	A	308	312	Right-handed 310
Helix 22	AC4	A	330	339	Right-handed alpha
Helix 23	AC5	A	357	359	Right-handed 310
Helix 24	AC6	A	378	387	Right-handed alpha
Helix 25	AC7	A	387	400	Right-handed alpha
Helix 26	AC8	A	400	418	Right-handed alpha
Helix 27	AC9	A	419	421	Right-handed 310
Helix 28	AD1	A	422	426	Right-handed 310
Helix 29	AD2	A	436	440	Right-handed 310
Helix 30	AD3	A	451	465	Right-handed alpha
Helix 31	AD4	A	468	481	Right-handed alpha
Helix 32	AD5	A	501	509	Right-handed 310
Helix 33	AD6	A	513	531	Right-handed alpha
Helix 34	AD7	A	539	558	Right-handed alpha
Helix 35	AD8	A	575	579	Right-handed 310
Helix 36	AD9	A	580	586	Right-handed alpha
Helix 37	AE1	A	593	596	Right-handed 310
Helix 38	AE2	A	605	617	Right-handed alpha
Helix 39	AE3	A	620	635	Right-handed alpha
Helix 40	AE4	A	637	641	Right-handed 310
Helix 41	AE5	A	655	662	Right-handed alpha
Helix 42	AE6	A	693	701	Right-handed alpha
Helix 43	AE7	A	701	712	Right-handed alpha
Helix 44	AE8	A	713	715	Right-handed 310
Helix 45	AE9	A	716	733	Right-handed alpha
Helix 46	AF1	A	736	740	Right-handed 310
Helix 47	AF2	B	28	32	Right-handed 310
Helix 48	AF3	B	34	38	Right-handed 310
Helix 49	AF4	B	44	50	Right-handed 310
Helix 50	AF5	B	52	56	Right-handed 310
Helix 51	AF6	B	63	69	Right-handed alpha
Helix 52	AF7	B	72	85	Right-handed alpha
Helix 53	AF8	B	93	97	Right-handed 310
Helix 54	AF9	B	98	112	Right-handed alpha
Helix 55	AG1	B	125	129	Right-handed 310
Helix 56	AG2	B	131	139	Right-handed 310
Helix 57	AG3	B	140	148	Right-handed alpha
Helix 58	AG4	B	148	156	Right-handed alpha
Helix 59	AG5	B	157	159	Right-handed 310
Helix 60	AG6	B	160	176	Right-handed alpha
Helix 61	AG7	B	234	238	Right-handed 310
Helix 62	AG8	B	240	254	Right-handed alpha
Helix 63	AG9	B	258	271	Right-handed alpha
Helix 64	AH1	B	280	284	Right-handed 310
Helix 65	AH2	B	287	291	Right-handed 310
Helix 66	AH3	B	292	296	Right-handed 310
Helix 67	AH4	B	308	312	Right-handed 310
Helix 68	AH5	B	330	339	Right-handed alpha
Helix 69	AH6	B	378	387	Right-handed alpha
Helix 70	AH7	B	387	400	Right-handed alpha
Helix 71	AH8	B	400	418	Right-handed alpha
Helix 72	AH9	B	422	426	Right-handed 310
Helix 73	AI1	B	436	440	Right-handed 310
Helix 74	AI2	B	451	464	Right-handed alpha
Helix 75	AI3	B	468	481	Right-handed alpha
Helix 76	AI4	B	495	499	Right-handed 310
Helix 77	AI5	B	501	509	Right-handed 310
Helix 78	AI6	B	512	530	Right-handed alpha
Helix 79	AI7	B	539	559	Right-handed alpha
Helix 80	AI8	B	582	588	Right-handed 310
Helix 81	AI9	B	593	596	Right-handed 310
Helix 82	AJ1	B	605	617	Right-handed alpha
Helix 83	AJ2	B	620	635	Right-handed alpha
Helix 84	AJ3	B	637	641	Right-handed 310
Helix 85	AJ4	B	655	662	Right-handed alpha
Helix 86	AJ5	B	693	701	Right-handed alpha
Helix 87	AJ6	B	701	712	Right-handed alpha
Helix 88	AJ7	B	713	715	Right-handed 310
Helix 89	AJ8	B	716	734	Right-handed alpha
Helix 90	AJ9	B	736	740	Right-handed 310

There are 8 sheets in PDB entry 8W1X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	215	216	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	345	first strand
Strand 2	A	351	355	anti-parallel
Strand 3	A	376	377	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	591	592	first strand
Strand 2	A	597	598	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	667	670	first strand
Strand 2	A	677	681	anti-parallel
Strand 3	A	687	692	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	211	first strand
Strand 2	B	215	216	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	345	first strand
Strand 2	B	351	355	anti-parallel
Strand 3	B	376	377	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	591	592	first strand
Strand 2	B	597	598	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	667	670	first strand
Strand 2	B	677	681	anti-parallel
Strand 3	B	687	692	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8W1X

Analysis of interatomic Contacts of Structural Units in PDB entry:
8W1X