Analysis of interatomic Contacts of Structural Units in PDB entry:
8W1Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8W1Y entry

There are 8 chains in PDB entry 8W1Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 24	ALA 106
A	HIS 108	ARG 740
B	GLY 24	ALA 106
B	HIS 108	ARG 740
C	GLY 24	ALA 106
C	HIS 108	ARG 740
D	GLY 24	ALA 106
D	HIS 108	ARG 740

There are181 helices in PDB entry 8W1Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	32	Right-handed 310
Helix 2	AA2	A	34	38	Right-handed 310
Helix 3	AA3	A	44	50	Right-handed 310
Helix 4	AA4	A	52	56	Right-handed 310
Helix 5	AA5	A	63	69	Right-handed alpha
Helix 6	AA6	A	72	86	Right-handed alpha
Helix 7	AA7	A	93	97	Right-handed 310
Helix 8	AA8	A	98	111	Right-handed alpha
Helix 9	AA9	A	125	129	Right-handed 310
Helix 10	AB1	A	131	139	Right-handed 310
Helix 11	AB2	A	140	148	Right-handed alpha
Helix 12	AB3	A	148	156	Right-handed alpha
Helix 13	AB4	A	157	159	Right-handed 310
Helix 14	AB5	A	160	176	Right-handed alpha
Helix 15	AB6	A	234	238	Right-handed 310
Helix 16	AB7	A	240	255	Right-handed alpha
Helix 17	AB8	A	258	271	Right-handed alpha
Helix 18	AB9	A	280	284	Right-handed 310
Helix 19	AC1	A	292	296	Right-handed 310
Helix 20	AC2	A	308	312	Right-handed 310
Helix 21	AC3	A	330	339	Right-handed alpha
Helix 22	AC4	A	357	359	Right-handed 310
Helix 23	AC5	A	378	387	Right-handed alpha
Helix 24	AC6	A	387	400	Right-handed alpha
Helix 25	AC7	A	400	416	Right-handed alpha
Helix 26	AC8	A	422	426	Right-handed 310
Helix 27	AC9	A	436	440	Right-handed 310
Helix 28	AD1	A	451	464	Right-handed alpha
Helix 29	AD2	A	468	481	Right-handed alpha
Helix 30	AD3	A	495	499	Right-handed 310
Helix 31	AD4	A	501	505	Right-handed 310
Helix 32	AD5	A	513	530	Right-handed alpha
Helix 33	AD6	A	539	558	Right-handed alpha
Helix 34	AD7	A	575	579	Right-handed 310
Helix 35	AD8	A	582	588	Right-handed 310
Helix 36	AD9	A	593	596	Right-handed 310
Helix 37	AE1	A	605	617	Right-handed alpha
Helix 38	AE2	A	620	633	Right-handed alpha
Helix 39	AE3	A	637	641	Right-handed 310
Helix 40	AE4	A	655	662	Right-handed alpha
Helix 41	AE5	A	693	701	Right-handed alpha
Helix 42	AE6	A	701	712	Right-handed alpha
Helix 43	AE7	A	713	715	Right-handed 310
Helix 44	AE8	A	716	733	Right-handed alpha
Helix 45	AE9	A	736	740	Right-handed 310
Helix 46	AF1	B	28	32	Right-handed 310
Helix 47	AF2	B	34	38	Right-handed 310
Helix 48	AF3	B	44	49	Right-handed 310
Helix 49	AF4	B	52	56	Right-handed 310
Helix 50	AF5	B	63	69	Right-handed alpha
Helix 51	AF6	B	72	85	Right-handed alpha
Helix 52	AF7	B	93	97	Right-handed 310
Helix 53	AF8	B	98	111	Right-handed alpha
Helix 54	AF9	B	125	129	Right-handed 310
Helix 55	AG1	B	131	139	Right-handed 310
Helix 56	AG2	B	140	148	Right-handed alpha
Helix 57	AG3	B	148	156	Right-handed alpha
Helix 58	AG4	B	157	159	Right-handed 310
Helix 59	AG5	B	160	176	Right-handed alpha
Helix 60	AG6	B	234	238	Right-handed 310
Helix 61	AG7	B	240	254	Right-handed alpha
Helix 62	AG8	B	258	271	Right-handed alpha
Helix 63	AG9	B	280	284	Right-handed 310
Helix 64	AH1	B	287	291	Right-handed 310
Helix 65	AH2	B	292	296	Right-handed 310
Helix 66	AH3	B	308	312	Right-handed 310
Helix 67	AH4	B	330	339	Right-handed alpha
Helix 68	AH5	B	357	359	Right-handed 310
Helix 69	AH6	B	378	387	Right-handed alpha
Helix 70	AH7	B	387	400	Right-handed alpha
Helix 71	AH8	B	400	418	Right-handed alpha
Helix 72	AH9	B	422	426	Right-handed 310
Helix 73	AI1	B	436	440	Right-handed 310
Helix 74	AI2	B	451	465	Right-handed alpha
Helix 75	AI3	B	468	481	Right-handed alpha
Helix 76	AI4	B	495	499	Right-handed 310
Helix 77	AI5	B	501	505	Right-handed 310
Helix 78	AI6	B	512	532	Right-handed alpha
Helix 79	AI7	B	539	559	Right-handed alpha
Helix 80	AI8	B	575	579	Right-handed 310
Helix 81	AI9	B	580	585	Right-handed alpha
Helix 82	AJ1	B	586	588	Right-handed 310
Helix 83	AJ2	B	593	596	Right-handed 310
Helix 84	AJ3	B	605	617	Right-handed alpha
Helix 85	AJ4	B	620	635	Right-handed alpha
Helix 86	AJ5	B	637	641	Right-handed 310
Helix 87	AJ6	B	655	662	Right-handed alpha
Helix 88	AJ7	B	693	701	Right-handed alpha
Helix 89	AJ8	B	701	712	Right-handed alpha
Helix 90	AJ9	B	716	733	Right-handed alpha
Helix 91	AK1	B	736	740	Right-handed 310
Helix 92	AK2	C	28	32	Right-handed 310
Helix 93	AK3	C	34	38	Right-handed 310
Helix 94	AK4	C	44	49	Right-handed 310
Helix 95	AK5	C	52	56	Right-handed 310
Helix 96	AK6	C	63	69	Right-handed alpha
Helix 97	AK7	C	72	85	Right-handed alpha
Helix 98	AK8	C	93	97	Right-handed 310
Helix 99	AK9	C	98	111	Right-handed alpha
Helix 100	AL1	C	125	129	Right-handed 310
Helix 101	AL2	C	131	139	Right-handed 310
Helix 102	AL3	C	140	148	Right-handed alpha
Helix 103	AL4	C	148	156	Right-handed alpha
Helix 104	AL5	C	157	159	Right-handed 310
Helix 105	AL6	C	160	176	Right-handed alpha
Helix 106	AL7	C	234	238	Right-handed 310
Helix 107	AL8	C	240	255	Right-handed alpha
Helix 108	AL9	C	258	271	Right-handed alpha
Helix 109	AM1	C	280	284	Right-handed 310
Helix 110	AM2	C	287	291	Right-handed 310
Helix 111	AM3	C	292	296	Right-handed 310
Helix 112	AM4	C	308	312	Right-handed 310
Helix 113	AM5	C	330	339	Right-handed alpha
Helix 114	AM6	C	357	359	Right-handed 310
Helix 115	AM7	C	378	387	Right-handed alpha
Helix 116	AM8	C	387	400	Right-handed alpha
Helix 117	AM9	C	400	416	Right-handed alpha
Helix 118	AN1	C	422	426	Right-handed 310
Helix 119	AN2	C	436	440	Right-handed 310
Helix 120	AN3	C	451	464	Right-handed alpha
Helix 121	AN4	C	468	481	Right-handed alpha
Helix 122	AN5	C	495	499	Right-handed 310
Helix 123	AN6	C	501	509	Right-handed 310
Helix 124	AN7	C	513	530	Right-handed alpha
Helix 125	AN8	C	539	558	Right-handed alpha
Helix 126	AN9	C	575	579	Right-handed 310
Helix 127	AO1	C	580	586	Right-handed alpha
Helix 128	AO2	C	593	596	Right-handed 310
Helix 129	AO3	C	605	617	Right-handed alpha
Helix 130	AO4	C	620	633	Right-handed alpha
Helix 131	AO5	C	637	641	Right-handed 310
Helix 132	AO6	C	655	662	Right-handed alpha
Helix 133	AO7	C	692	701	Right-handed alpha
Helix 134	AO8	C	701	712	Right-handed alpha
Helix 135	AO9	C	713	715	Right-handed 310
Helix 136	AP1	C	716	733	Right-handed alpha
Helix 137	AP2	D	28	32	Right-handed 310
Helix 138	AP3	D	34	38	Right-handed 310
Helix 139	AP4	D	44	49	Right-handed 310
Helix 140	AP5	D	52	56	Right-handed 310
Helix 141	AP6	D	63	69	Right-handed alpha
Helix 142	AP7	D	72	85	Right-handed alpha
Helix 143	AP8	D	93	97	Right-handed 310
Helix 144	AP9	D	98	111	Right-handed alpha
Helix 145	AQ1	D	125	129	Right-handed 310
Helix 146	AQ2	D	131	139	Right-handed 310
Helix 147	AQ3	D	140	148	Right-handed alpha
Helix 148	AQ4	D	148	156	Right-handed alpha
Helix 149	AQ5	D	157	159	Right-handed 310
Helix 150	AQ6	D	160	176	Right-handed alpha
Helix 151	AQ7	D	234	238	Right-handed 310
Helix 152	AQ8	D	240	254	Right-handed alpha
Helix 153	AQ9	D	258	271	Right-handed alpha
Helix 154	AR1	D	280	284	Right-handed 310
Helix 155	AR2	D	287	291	Right-handed 310
Helix 156	AR3	D	292	296	Right-handed 310
Helix 157	AR4	D	308	312	Right-handed 310
Helix 158	AR5	D	330	339	Right-handed alpha
Helix 159	AR6	D	357	359	Right-handed 310
Helix 160	AR7	D	378	387	Right-handed alpha
Helix 161	AR8	D	387	400	Right-handed alpha
Helix 162	AR9	D	401	418	Right-handed alpha
Helix 163	AS1	D	422	426	Right-handed 310
Helix 164	AS2	D	436	440	Right-handed 310
Helix 165	AS3	D	451	464	Right-handed alpha
Helix 166	AS4	D	468	481	Right-handed alpha
Helix 167	AS5	D	495	499	Right-handed 310
Helix 168	AS6	D	501	505	Right-handed 310
Helix 169	AS7	D	512	532	Right-handed alpha
Helix 170	AS8	D	539	559	Right-handed alpha
Helix 171	AS9	D	582	588	Right-handed 310
Helix 172	AT1	D	593	596	Right-handed 310
Helix 173	AT2	D	605	617	Right-handed alpha
Helix 174	AT3	D	620	635	Right-handed alpha
Helix 175	AT4	D	637	641	Right-handed 310
Helix 176	AT5	D	655	662	Right-handed alpha
Helix 177	AT6	D	693	701	Right-handed alpha
Helix 178	AT7	D	701	712	Right-handed alpha
Helix 179	AT8	D	713	715	Right-handed 310
Helix 180	AT9	D	716	733	Right-handed alpha
Helix 181	AU1	D	736	740	Right-handed 310

There are 17 sheets in PDB entry 8W1Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	215	216	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	345	first strand
Strand 2	A	351	355	anti-parallel
Strand 3	A	376	377	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	449	first strand
Strand 2	A	536	537	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	591	592	first strand
Strand 2	A	597	598	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	667	670	first strand
Strand 2	A	677	681	anti-parallel
Strand 3	A	687	692	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	211	first strand
Strand 2	B	215	216	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	345	first strand
Strand 2	B	351	355	anti-parallel
Strand 3	B	376	377	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	591	592	first strand
Strand 2	B	597	598	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	667	670	first strand
Strand 2	B	677	681	anti-parallel
Strand 3	B	687	692	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	211	first strand
Strand 2	C	215	216	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	341	345	first strand
Strand 2	C	351	355	anti-parallel
Strand 3	C	376	377	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	591	592	first strand
Strand 2	C	597	598	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	667	670	first strand
Strand 2	C	678	681	anti-parallel
Strand 3	C	687	691	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	210	211	first strand
Strand 2	D	215	216	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	341	345	first strand
Strand 2	D	351	355	anti-parallel
Strand 3	D	376	377	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	591	592	first strand
Strand 2	D	597	598	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	667	670	first strand
Strand 2	D	677	681	anti-parallel
Strand 3	D	687	692	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8W1Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
8W1Y