Analysis of interatomic Contacts of Structural Units in PDB entry:
8W2D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W2D entry

There are 2 chains in PDB entry 8W2D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2656CYS 2979
B
 MET 2659CYS 2979
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8W2D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2657 2671Right-handed alpha
Helix 2
AA2
A
2687 2699Right-handed alpha
Helix 3
AA3
A
2703 2709Right-handed alpha
Helix 4
AA4
A
2712 2722Right-handed alpha
Helix 5
AA5
A
2753 2756Right-handed 310
Helix 6
AA6
A
2757 2768Right-handed alpha
Helix 7
AA7
A
2785 2808Right-handed alpha
Helix 8
AA8
A
2820 2834Right-handed alpha
Helix 9
AA9
A
2859 2871Right-handed alpha
Helix 10
AB1
A
2877 2908Right-handed alpha
Helix 11
AB2
A
2931 2936Right-handed alpha
Helix 12
AB3
A
2937 2942Right-handed 310
Helix 13
AB4
A
2957 2962Right-handed alpha
Helix 14
AB5
A
2962 2977Right-handed alpha
Helix 15
AB6
B
2660 2670Right-handed alpha
Helix 16
AB7
B
2681 2685Right-handed 310
Helix 17
AB8
B
2691 2699Right-handed alpha
Helix 18
AB9
B
2704 2709Right-handed alpha
Helix 19
AC1
B
2712 2720Right-handed alpha
Helix 20
AC2
B
2753 2756Right-handed 310
Helix 21
AC3
B
2757 2768Right-handed alpha
Helix 22
AC4
B
2785 2808Right-handed alpha
Helix 23
AC5
B
2820 2834Right-handed alpha
Helix 24
AC6
B
2859 2871Right-handed alpha
Helix 25
AC7
B
2877 2908Right-handed alpha
Helix 26
AC8
B
2931 2936Right-handed alpha
Helix 27
AC9
B
2937 2942Right-handed 310
Helix 28
AD1
B
2957 2962Right-handed alpha
Helix 29
AD2
B
2962 2977Right-handed alpha
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There are 2 sheets in PDB entry 8W2D. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2730 2734first strand
Strand 2
A
2771 2776anti-parallel
Strand 3
A
2742 2747parallel
Strand 4
A
2812 2817parallel
Strand 5
A
2838 2844parallel
Strand 6
A
2918 2923parallel
Strand 7
A
2946 2951parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2730 2734first strand
Strand 2
B
2771 2776anti-parallel
Strand 3
B
2742 2747parallel
Strand 4
B
2812 2817parallel
Strand 5
B
2838 2844parallel
Strand 6
B
2918 2923parallel
Strand 7
B
2946 2951parallel
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