Analysis of interatomic Contacts of Structural Units in PDB entry:
8W2P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W2P entry

There are 6 chains in PDB entry 8W2P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3ASP 916
B
 MET 1ASP 916
C
 GLY 2SER 476
D
 C 7 A 47
E
 T 6 G 22
E
 G 24 G 46
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 95 helices in PDB entry 8W2P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 13Right-handed alpha
Helix 2
AA2
A
47 61Right-handed alpha
Helix 3
AA3
A
113 117Right-handed 310
Helix 4
AA4
A
118 123Right-handed alpha
Helix 5
AA5
A
123 132Right-handed alpha
Helix 6
AA6
A
167 174Right-handed alpha
Helix 7
AA7
A
209 220Right-handed alpha
Helix 8
AA8
A
231 253Right-handed alpha
Helix 9
AA9
A
272 288Right-handed alpha
Helix 10
AB1
A
296 303Right-handed alpha
Helix 11
AB2
A
312 324Right-handed alpha
Helix 12
AB3
A
339 349Right-handed alpha
Helix 13
AB4
A
350 356Right-handed alpha
Helix 14
AB5
A
363 374Right-handed alpha
Helix 15
AB6
A
375 386Right-handed alpha
Helix 16
AB7
A
401 416Right-handed alpha
Helix 17
AB8
A
418 423Right-handed 310
Helix 18
AB9
A
428 437Right-handed alpha
Helix 19
AC1
A
446 450Right-handed alpha
Helix 20
AC2
A
457 471Right-handed alpha
Helix 21
AC3
A
473 476Right-handed 310
Helix 22
AC4
A
486 490Right-handed 310
Helix 23
AC5
A
497 501Right-handed 310
Helix 24
AC6
A
531 539Right-handed alpha
Helix 25
AC7
A
554 561Right-handed alpha
Helix 26
AC8
A
574 579Right-handed alpha
Helix 27
AC9
A
582 593Right-handed alpha
Helix 28
AD1
A
623 656Right-handed alpha
Helix 29
AD2
A
668 674Right-handed alpha
Helix 30
AD3
A
679 689Right-handed alpha
Helix 31
AD4
A
694 699Right-handed 310
Helix 32
AD5
A
709 714Right-handed alpha
Helix 33
AD6
A
722 727Right-handed alpha
Helix 34
AD7
A
731 742Right-handed alpha
Helix 35
AD8
A
782 812Right-handed alpha
Helix 36
AD9
A
813 815Right-handed 310
Helix 37
AE1
A
818 857Right-handed alpha
Helix 38
AE2
A
879 883Right-handed 310
Helix 39
AE3
A
886 891Right-handed 310
Helix 40
AE4
A
905 913Right-handed alpha
Helix 41
AE5
B
2 15Right-handed alpha
Helix 42
AE6
B
46 61Right-handed alpha
Helix 43
AE7
B
110 115Right-handed alpha
Helix 44
AE8
B
118 123Right-handed alpha
Helix 45
AE9
B
123 135Right-handed alpha
Helix 46
AF1
B
167 174Right-handed alpha
Helix 47
AF2
B
209 225Right-handed alpha
Helix 48
AF3
B
233 252Right-handed alpha
Helix 49
AF4
B
272 288Right-handed alpha
Helix 50
AF5
B
296 301Right-handed alpha
Helix 51
AF6
B
312 324Right-handed alpha
Helix 52
AF7
B
341 352Right-handed alpha
Helix 53
AF8
B
363 374Right-handed alpha
Helix 54
AF9
B
375 387Right-handed alpha
Helix 55
AG1
B
401 416Right-handed alpha
Helix 56
AG2
B
419 423Right-handed 310
Helix 57
AG3
B
427 437Right-handed alpha
Helix 58
AG4
B
444 449Right-handed 310
Helix 59
AG5
B
457 471Right-handed alpha
Helix 60
AG6
B
486 490Right-handed 310
Helix 61
AG7
B
535 539Right-handed 310
Helix 62
AG8
B
549 551Right-handed 310
Helix 63
AG9
B
552 561Right-handed alpha
Helix 64
AH1
B
574 579Right-handed alpha
Helix 65
AH2
B
582 592Right-handed alpha
Helix 66
AH3
B
623 655Right-handed alpha
Helix 67
AH4
B
678 689Right-handed alpha
Helix 68
AH5
B
701 709Right-handed alpha
Helix 69
AH6
B
710 717Right-handed alpha
Helix 70
AH7
B
723 727Right-handed 310
Helix 71
AH8
B
730 742Right-handed alpha
Helix 72
AH9
B
781 816Right-handed alpha
Helix 73
AI1
B
818 860Right-handed alpha
Helix 74
AI2
B
867 871Right-handed 310
Helix 75
AI3
B
875 883Right-handed alpha
Helix 76
AI4
B
884 889Right-handed 310
Helix 77
AI5
B
904 910Right-handed alpha
Helix 78
AI6
C
8 14Right-handed 310
Helix 79
AI7
C
21 29Right-handed alpha
Helix 80
AI8
C
86 96Right-handed alpha
Helix 81
AI9
C
143 153Right-handed alpha
Helix 82
AJ1
C
173 178Right-handed alpha
Helix 83
AJ2
C
183 193Right-handed alpha
Helix 84
AJ3
C
193 214Right-handed alpha
Helix 85
AJ4
C
219 230Right-handed alpha
Helix 86
AJ5
C
236 241Right-handed alpha
Helix 87
AJ6
C
250 255Right-handed alpha
Helix 88
AJ7
C
263 277Right-handed alpha
Helix 89
AJ8
C
312 316Right-handed 310
Helix 90
AJ9
C
336 340Right-handed 310
Helix 91
AK1
C
389 399Right-handed alpha
Helix 92
AK2
C
405 410Right-handed alpha
Helix 93
AK3
C
421 427Right-handed alpha
Helix 94
AK4
C
440 458Right-handed alpha
Helix 95
AK5
C
458 475Right-handed alpha
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There are 13 sheets in PDB entry 8W2P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 75first strand
Strand 2
A
88 93anti-parallel
Strand 3
A
102 106anti-parallel
Strand 4
A
141 146parallel
Strand 5
A
155 160anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
478 480first strand
Strand 2
A
451 455parallel
Strand 3
A
393 395parallel
Strand 4
A
517 522parallel
Strand 5
A
562 573parallel
Strand 6
A
614 616anti-parallel
Strand 7
A
597 600anti-parallel
Strand 8
A
747 750parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
503 505first strand
Strand 2
A
511 513anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 23first strand
Strand 2
B
28 31anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 37first strand
Strand 2
B
71 75parallel
Strand 3
B
88 94anti-parallel
Strand 4
B
100 106anti-parallel
Strand 5
B
140 149parallel
Strand 6
B
152 161anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 80first strand
Strand 2
B
83 85anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
517 522first strand
Strand 2
B
562 573parallel
Strand 3
B
614 621anti-parallel
Strand 4
B
593 601anti-parallel
Strand 5
B
745 750parallel
Strand 6
C
247 249anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
754 756first strand
Strand 2
B
765 768anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 60first strand
Strand 2
C
75 77anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
108 109first strand
Strand 2
C
135 136anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
283 285first strand
Strand 2
C
429 431anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
290 294first strand
Strand 2
C
378 383anti-parallel
Strand 3
C
347 350anti-parallel
Strand 4
C
362 363anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
302 303first strand
Strand 2
C
328 330anti-parallel
Strand 3
C
308 310anti-parallel
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