Analysis of interatomic Contacts of Structural Units in PDB entry:
8W2Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W2Q entry

There are 6 chains in PDB entry 8W2Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 916
B
 LYS 2ASP 916
C
 GLY 2SER 476
D
 C 7 A 21
D
 C 23 A 47
E
 T 6 G 46
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 96 helices in PDB entry 8W2Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 13Right-handed alpha
Helix 2
AA2
A
46 62Right-handed alpha
Helix 3
AA3
A
110 115Right-handed alpha
Helix 4
AA4
A
123 134Right-handed alpha
Helix 5
AA5
A
167 174Right-handed alpha
Helix 6
AA6
A
211 225Right-handed alpha
Helix 7
AA7
A
232 253Right-handed alpha
Helix 8
AA8
A
272 291Right-handed alpha
Helix 9
AA9
A
296 302Right-handed alpha
Helix 10
AB1
A
312 323Right-handed alpha
Helix 11
AB2
A
340 351Right-handed alpha
Helix 12
AB3
A
363 374Right-handed alpha
Helix 13
AB4
A
375 388Right-handed alpha
Helix 14
AB5
A
401 416Right-handed alpha
Helix 15
AB6
A
419 423Right-handed 310
Helix 16
AB7
A
427 437Right-handed alpha
Helix 17
AB8
A
439 449Right-handed 310
Helix 18
AB9
A
457 472Right-handed alpha
Helix 19
AC1
A
474 476Right-handed 310
Helix 20
AC2
A
486 490Right-handed 310
Helix 21
AC3
A
497 501Right-handed 310
Helix 22
AC4
A
531 539Right-handed alpha
Helix 23
AC5
A
549 551Right-handed 310
Helix 24
AC6
A
552 561Right-handed alpha
Helix 25
AC7
A
573 577Right-handed 310
Helix 26
AC8
A
582 592Right-handed alpha
Helix 27
AC9
A
623 656Right-handed alpha
Helix 28
AD1
A
677 689Right-handed alpha
Helix 29
AD2
A
694 700Right-handed 310
Helix 30
AD3
A
701 709Right-handed alpha
Helix 31
AD4
A
730 742Right-handed alpha
Helix 32
AD5
A
781 812Right-handed alpha
Helix 33
AD6
A
812 817Right-handed alpha
Helix 34
AD7
A
819 861Right-handed alpha
Helix 35
AD8
A
875 884Right-handed alpha
Helix 36
AD9
A
886 890Right-handed 310
Helix 37
AE1
A
904 912Right-handed alpha
Helix 38
AE2
B
3 15Right-handed alpha
Helix 39
AE3
B
45 61Right-handed alpha
Helix 40
AE4
B
117 123Right-handed alpha
Helix 41
AE5
B
124 134Right-handed alpha
Helix 42
AE6
B
167 175Right-handed alpha
Helix 43
AE7
B
209 226Right-handed alpha
Helix 44
AE8
B
231 253Right-handed alpha
Helix 45
AE9
B
272 289Right-handed alpha
Helix 46
AF1
B
296 303Right-handed alpha
Helix 47
AF2
B
312 323Right-handed alpha
Helix 48
AF3
B
339 349Right-handed alpha
Helix 49
AF4
B
352 357Right-handed alpha
Helix 50
AF5
B
363 374Right-handed alpha
Helix 51
AF6
B
375 386Right-handed alpha
Helix 52
AF7
B
401 416Right-handed alpha
Helix 53
AF8
B
427 437Right-handed alpha
Helix 54
AF9
B
446 451Right-handed alpha
Helix 55
AG1
B
457 471Right-handed alpha
Helix 56
AG2
B
486 490Right-handed 310
Helix 57
AG3
B
506 509Right-handed 310
Helix 58
AG4
B
533 537Right-handed 310
Helix 59
AG5
B
549 560Right-handed alpha
Helix 60
AG6
B
574 578Right-handed alpha
Helix 61
AG7
B
582 592Right-handed alpha
Helix 62
AG8
B
623 656Right-handed alpha
Helix 63
AG9
B
668 674Right-handed alpha
Helix 64
AH1
B
678 689Right-handed alpha
Helix 65
AH2
B
694 698Right-handed 310
Helix 66
AH3
B
702 717Right-handed alpha
Helix 67
AH4
B
722 727Right-handed alpha
Helix 68
AH5
B
731 742Right-handed alpha
Helix 69
AH6
B
781 813Right-handed alpha
Helix 70
AH7
B
824 860Right-handed alpha
Helix 71
AH8
B
879 884Right-handed 310
Helix 72
AH9
B
885 891Right-handed 310
Helix 73
AI1
B
904 913Right-handed alpha
Helix 74
AI2
C
10 14Right-handed 310
Helix 75
AI3
C
21 28Right-handed alpha
Helix 76
AI4
C
37 42Right-handed alpha
Helix 77
AI5
C
86 96Right-handed alpha
Helix 78
AI6
C
112 116Right-handed 310
Helix 79
AI7
C
143 153Right-handed alpha
Helix 80
AI8
C
173 180Right-handed alpha
Helix 81
AI9
C
184 193Right-handed alpha
Helix 82
AJ1
C
198 214Right-handed alpha
Helix 83
AJ2
C
219 229Right-handed alpha
Helix 84
AJ3
C
230 232Right-handed 310
Helix 85
AJ4
C
233 241Right-handed alpha
Helix 86
AJ5
C
250 254Right-handed 310
Helix 87
AJ6
C
263 277Right-handed alpha
Helix 88
AJ7
C
287 290Right-handed 310
Helix 89
AJ8
C
312 316Right-handed 310
Helix 90
AJ9
C
337 341Right-handed 310
Helix 91
AK1
C
389 399Right-handed alpha
Helix 92
AK2
C
399 404Right-handed alpha
Helix 93
AK3
C
405 410Right-handed alpha
Helix 94
AK4
C
414 418Right-handed 310
Helix 95
AK5
C
421 427Right-handed alpha
Helix 96
AK6
C
434 475Right-handed alpha
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There are 15 sheets in PDB entry 8W2Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 106first strand
Strand 2
A
140 144parallel
Strand 3
A
160 161anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 395first strand
Strand 2
A
452 454parallel
Strand 3
A
478 479parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
517 521first strand
Strand 2
A
562 570parallel
Strand 3
A
615 621anti-parallel
Strand 4
A
593 600anti-parallel
Strand 5
A
745 750parallel
Strand 6
C
4 8anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
30 31anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 71first strand
Strand 2
B
92 93anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 106first strand
Strand 2
B
140 147parallel
Strand 3
B
154 161anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
453 454first strand
Strand 2
B
478 479parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
503 504first strand
Strand 2
B
512 513anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
517 522first strand
Strand 2
B
562 573parallel
Strand 3
B
614 621anti-parallel
Strand 4
B
593 600anti-parallel
Strand 5
B
747 750parallel
Strand 6
C
245 246anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
756 759first strand
Strand 2
B
762 765anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 60first strand
Strand 2
C
75 76anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 120first strand
Strand 2
C
106 109anti-parallel
Strand 3
C
135 138anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
283 285first strand
Strand 2
C
429 431anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
302 303first strand
Strand 2
C
328 330anti-parallel
Strand 3
C
308 310anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
361 363first strand
Strand 2
C
347 350anti-parallel
Strand 3
C
378 380anti-parallel
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