Analysis of interatomic Contacts of Structural Units in PDB entry:
8W2Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W2Z entry

There are 4 chains in PDB entry 8W2Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4ALA 743
B
 A 10 A 146
C
 C -13 T 5
D
 C 0 G 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 8W2Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 75Right-handed alpha
Helix 2
AA2
A
80 90Right-handed alpha
Helix 3
AA3
A
136 150Right-handed alpha
Helix 4
AA4
A
154 167Right-handed alpha
Helix 5
AA5
A
197 207Right-handed alpha
Helix 6
AA6
A
215 225Right-handed alpha
Helix 7
AA7
A
226 231Right-handed 310
Helix 8
AA8
A
232 239Right-handed alpha
Helix 9
AA9
A
242 253Right-handed alpha
Helix 10
AB1
A
288 303Right-handed alpha
Helix 11
AB2
A
449 463Right-handed alpha
Helix 12
AB3
A
495 505Right-handed alpha
Helix 13
AB4
A
585 599Right-handed alpha
Helix 14
AB5
A
610 614Right-handed 310
Helix 15
AB6
A
636 638Right-handed 310
Helix 16
AB7
A
736 738Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 8W2Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 34first strand
Strand 2
A
16 22anti-parallel
Strand 3
A
5 10anti-parallel
Strand 4
A
311 313parallel
Strand 5
A
470 471parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
560 562first strand
Strand 2
A
565 571anti-parallel
Strand 3
A
627 631anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
640 643first strand
Strand 2
A
646 649anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
666 673first strand
Strand 2
A
654 662anti-parallel
Strand 3
A
691 696anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
733 734first strand
Strand 2
A
721 724anti-parallel
Strand 3
A
710 715anti-parallel
Strand 4
A
701 704anti-parallel
Strand 5
A
740 742anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il