Analysis of interatomic Contacts of Structural Units in PDB entry:
8W3D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8W3D entry

There are 4 chains in PDB entry 8W3D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 467	THR 764
B	VAL 463	THR 764
C	GLU 467	ASN 766
D	VAL 463	THR 765

There are 53 helices in PDB entry 8W3D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	477	479	Right-handed 310
Helix 2	AA2	A	524	542	Right-handed alpha
Helix 3	AA3	A	571	578	Right-handed alpha
Helix 4	AA4	A	589	593	Right-handed 310
Helix 5	AA5	A	599	620	Right-handed alpha
Helix 6	AA6	A	628	630	Right-handed 310
Helix 7	AA7	A	666	670	Right-handed 310
Helix 8	AA8	A	671	677	Right-handed alpha
Helix 9	AA9	A	681	698	Right-handed alpha
Helix 10	AB1	A	708	718	Right-handed alpha
Helix 11	AB2	A	729	740	Right-handed alpha
Helix 12	AB3	A	743	747	Right-handed 310
Helix 13	AB4	A	749	764	Right-handed alpha
Helix 14	AB5	B	477	479	Right-handed 310
Helix 15	AB6	B	524	542	Right-handed alpha
Helix 16	AB7	B	571	579	Right-handed alpha
Helix 17	AB8	B	593	597	Right-handed 310
Helix 18	AB9	B	599	620	Right-handed alpha
Helix 19	AC1	B	628	630	Right-handed 310
Helix 20	AC2	B	666	670	Right-handed 310
Helix 21	AC3	B	671	677	Right-handed alpha
Helix 22	AC4	B	681	698	Right-handed alpha
Helix 23	AC5	B	708	718	Right-handed alpha
Helix 24	AC6	B	729	740	Right-handed alpha
Helix 25	AC7	B	743	747	Right-handed 310
Helix 26	AC8	B	749	764	Right-handed alpha
Helix 27	AC9	C	477	479	Right-handed 310
Helix 28	AD1	C	524	542	Right-handed alpha
Helix 29	AD2	C	571	578	Right-handed alpha
Helix 30	AD3	C	589	593	Right-handed 310
Helix 31	AD4	C	599	620	Right-handed alpha
Helix 32	AD5	C	628	630	Right-handed 310
Helix 33	AD6	C	666	670	Right-handed 310
Helix 34	AD7	C	671	677	Right-handed alpha
Helix 35	AD8	C	681	698	Right-handed alpha
Helix 36	AD9	C	708	718	Right-handed alpha
Helix 37	AE1	C	729	740	Right-handed alpha
Helix 38	AE2	C	743	747	Right-handed 310
Helix 39	AE3	C	749	766	Right-handed alpha
Helix 40	AE4	D	477	479	Right-handed 310
Helix 41	AE5	D	524	542	Right-handed alpha
Helix 42	AE6	D	571	579	Right-handed alpha
Helix 43	AE7	D	593	597	Right-handed 310
Helix 44	AE8	D	599	620	Right-handed alpha
Helix 45	AE9	D	628	630	Right-handed 310
Helix 46	AF1	D	655	659	Right-handed 310
Helix 47	AF2	D	666	670	Right-handed 310
Helix 48	AF3	D	671	677	Right-handed alpha
Helix 49	AF4	D	681	698	Right-handed alpha
Helix 50	AF5	D	708	718	Right-handed alpha
Helix 51	AF6	D	729	740	Right-handed alpha
Helix 52	AF7	D	743	747	Right-handed 310
Helix 53	AF8	D	749	765	Right-handed alpha

There are 14 sheets in PDB entry 8W3D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	481	488	first strand
Strand 2	A	494	501	anti-parallel
Strand 3	A	511	518	anti-parallel
Strand 4	A	561	565	anti-parallel
Strand 5	A	550	554	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	622	623	first strand
Strand 2	A	649	650	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	632	634	first strand
Strand 2	A	640	642	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	656	657	first strand
Strand 2	A	679	680	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	481	488	first strand
Strand 2	B	494	501	anti-parallel
Strand 3	B	511	518	anti-parallel
Strand 4	B	561	565	anti-parallel
Strand 5	B	550	554	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	622	623	first strand
Strand 2	B	649	650	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	632	634	first strand
Strand 2	B	640	642	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	481	488	first strand
Strand 2	C	495	501	anti-parallel
Strand 3	C	511	517	anti-parallel
Strand 4	C	561	565	anti-parallel
Strand 5	C	550	554	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	622	623	first strand
Strand 2	C	649	650	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	632	634	first strand
Strand 2	C	640	642	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	656	657	first strand
Strand 2	C	679	680	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	481	488	first strand
Strand 2	D	495	501	anti-parallel
Strand 3	D	511	517	anti-parallel
Strand 4	D	561	565	anti-parallel
Strand 5	D	550	554	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	622	623	first strand
Strand 2	D	649	650	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	632	634	first strand
Strand 2	D	640	642	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8W3D

Analysis of interatomic Contacts of Structural Units in PDB entry:
8W3D