Analysis of interatomic Contacts of Structural Units in PDB entry:
8W3Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8W3Q entry

There is 1 chain in PDB entry 8W3Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	LEU 19	ALA 468

There are 15 helices in PDB entry 8W3Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	65	82	Right-handed alpha
Helix 2	AA2	F	108	126	Right-handed alpha
Helix 3	AA3	F	128	139	Right-handed alpha
Helix 4	AA4	F	159	167	Right-handed alpha
Helix 5	AA5	F	167	173	Right-handed alpha
Helix 6	AA6	F	174	177	Right-handed 310
Helix 7	AA7	F	182	206	Right-handed alpha
Helix 8	AA8	F	219	229	Right-handed alpha
Helix 9	AA9	F	233	243	Right-handed alpha
Helix 10	AB1	F	243	251	Right-handed alpha
Helix 11	AB2	F	318	320	Right-handed 310
Helix 12	AB3	F	334	336	Right-handed 310
Helix 13	AB4	F	340	343	Right-handed 310
Helix 14	AB5	F	344	349	Right-handed alpha
Helix 15	AB6	F	455	468	Right-handed alpha

There are 6 sheets in PDB entry 8W3Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	322	325	first strand
Strand 2	F	328	332	anti-parallel
Strand 3	F	29	40	parallel
Strand 4	F	274	284	anti-parallel
Strand 5	F	304	309	anti-parallel
Strand 6	F	312	316	anti-parallel
Strand 7	F	337	339	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	322	325	first strand
Strand 2	F	328	332	anti-parallel
Strand 3	F	29	40	parallel
Strand 4	F	20	24	anti-parallel
Strand 5	F	429	433	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	142	145	first strand
Strand 2	F	153	158	anti-parallel
Strand 3	F	42	51	parallel
Strand 4	F	262	271	anti-parallel
Strand 5	F	252	259	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	287	291	first strand
Strand 2	F	294	300	anti-parallel
Strand 3	F	359	362	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	368	372	first strand
Strand 2	F	375	380	anti-parallel
Strand 3	F	402	407	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	394	398	first strand
Strand 2	F	386	390	anti-parallel
Strand 3	F	413	416	anti-parallel
Strand 4	F	419	422	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8W3Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
8W3Q