Analysis of interatomic Contacts of Structural Units in PDB entry:
8W3U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W3U entry

There are 3 chains in PDB entry 8W3U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 311
B
 GLU 2GLU 39
B
 GLU 41ILE 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 8W3U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 26Right-handed alpha
Helix 2
AA2
A
50 61Right-handed alpha
Helix 3
AA3
A
74 81Right-handed alpha
Helix 4
AA4
A
81 90Right-handed alpha
Helix 5
AA5
A
90 104Right-handed alpha
Helix 6
AA6
A
112 117Right-handed 310
Helix 7
AA7
A
126 131Right-handed alpha
Helix 8
AA8
A
132 136Right-handed 310
Helix 9
AA9
A
140 161Right-handed alpha
Helix 10
AB1
A
184 195Right-handed alpha
Helix 11
AB2
A
212 222Right-handed alpha
Helix 12
AB3
A
223 225Right-handed 310
Helix 13
AB4
A
237 239Right-handed 310
Helix 14
AB5
A
244 256Right-handed alpha
Helix 15
AB6
A
279 286Right-handed alpha
Helix 16
AB7
A
293 309Right-handed alpha
Helix 17
AB8
B
13 26Right-handed alpha
Helix 18
AB9
B
50 61Right-handed alpha
Helix 19
AC1
B
74 81Right-handed alpha
Helix 20
AC2
B
81 90Right-handed alpha
Helix 21
AC3
B
90 104Right-handed alpha
Helix 22
AC4
B
112 117Right-handed 310
Helix 23
AC5
B
126 131Right-handed alpha
Helix 24
AC6
B
132 136Right-handed 310
Helix 25
AC7
B
140 161Right-handed alpha
Helix 26
AC8
B
184 195Right-handed alpha
Helix 27
AC9
B
212 222Right-handed alpha
Helix 28
AD1
B
223 225Right-handed 310
Helix 29
AD2
B
237 239Right-handed 310
Helix 30
AD3
B
244 256Right-handed alpha
Helix 31
AD4
B
258 260Right-handed 310
Helix 32
AD5
B
279 287Right-handed alpha
Helix 33
AD6
B
293 309Right-handed alpha
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There are 8 sheets in PDB entry 8W3U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
A
29 34parallel
Strand 3
A
5 9parallel
Strand 4
A
65 68parallel
Strand 5
A
106 110parallel
Strand 6
A
163 169parallel
Strand 7
A
231 234parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
210 211parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 202first strand
Strand 2
A
262 265parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 208first strand
Strand 2
A
241 243anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 45first strand
Strand 2
B
29 34parallel
Strand 3
B
5 9parallel
Strand 4
B
65 68parallel
Strand 5
B
106 110parallel
Strand 6
B
163 169parallel
Strand 7
B
231 234parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 173first strand
Strand 2
B
210 211parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 202first strand
Strand 2
B
262 265parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 208first strand
Strand 2
B
241 243anti-parallel
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