Analysis of interatomic Contacts of Structural Units in PDB entry:
8W3V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8W3V entry

There are 2 chains in PDB entry 8W3V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 32	ASN 433
B	ASN 31	ASN 433

There is 1 helix in PDB entry 8W3V. Click on helix number for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	120	123	Right-handed 310

There are 16 sheets in PDB entry 8W3V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	39	first strand
Strand 2	A	428	431	anti-parallel
Strand 3	A	418	423	anti-parallel
Strand 4	A	408	414	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	51	first strand
Strand 2	A	56	61	anti-parallel
Strand 3	A	66	70	anti-parallel
Strand 4	A	76	80	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	93	first strand
Strand 2	A	105	110	anti-parallel
Strand 3	A	115	119	anti-parallel
Strand 4	A	125	129	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	142	first strand
Strand 2	A	147	151	anti-parallel
Strand 3	A	155	158	anti-parallel
Strand 4	A	164	167	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	182	first strand
Strand 2	A	186	191	anti-parallel
Strand 3	A	194	201	anti-parallel
Strand 4	A	211	218	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	231	first strand
Strand 2	A	235	240	anti-parallel
Strand 3	A	245	249	anti-parallel
Strand 4	A	255	259	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	291	first strand
Strand 2	A	295	300	anti-parallel
Strand 3	A	303	308	anti-parallel
Strand 4	A	313	318	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	331	first strand
Strand 2	A	337	341	anti-parallel
Strand 3	A	346	350	anti-parallel
Strand 4	A	396	401	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	40	first strand
Strand 2	B	427	432	anti-parallel
Strand 3	B	418	423	anti-parallel
Strand 4	B	408	414	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	56	61	anti-parallel
Strand 3	B	65	70	anti-parallel
Strand 4	B	76	81	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	93	first strand
Strand 2	B	105	110	anti-parallel
Strand 3	B	114	118	anti-parallel
Strand 4	B	125	129	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	142	first strand
Strand 2	B	147	151	anti-parallel
Strand 3	B	155	158	anti-parallel
Strand 4	B	164	167	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	182	first strand
Strand 2	B	186	191	anti-parallel
Strand 3	B	194	201	anti-parallel
Strand 4	B	211	218	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	231	first strand
Strand 2	B	235	240	anti-parallel
Strand 3	B	245	249	anti-parallel
Strand 4	B	255	259	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	291	first strand
Strand 2	B	295	298	anti-parallel
Strand 3	B	304	308	anti-parallel
Strand 4	B	314	318	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	330	first strand
Strand 2	B	337	341	anti-parallel
Strand 3	B	346	350	anti-parallel
Strand 4	B	396	401	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8W3V

Analysis of interatomic Contacts of Structural Units in PDB entry:
8W3V