Analysis of interatomic Contacts of Structural Units in PDB entry:
8W41


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W41 entry

There are 3 chains in PDB entry 8W41 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 2ALA 148
I
 ASP 3ALA 148
A
 ASP 3SER 1268
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 67 helices in PDB entry 8W41. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
6 21Right-handed alpha
Helix 2
AA2
B
29 40Right-handed alpha
Helix 3
AA3
B
45 56Right-handed alpha
Helix 4
AA4
B
65 74Right-handed alpha
Helix 5
AA5
B
80 94Right-handed alpha
Helix 6
AA6
B
102 114Right-handed alpha
Helix 7
AA7
B
118 130Right-handed alpha
Helix 8
AA8
B
138 148Right-handed alpha
Helix 9
AA9
I
6 20Right-handed alpha
Helix 10
AB1
I
29 38Right-handed alpha
Helix 11
AB2
I
45 57Right-handed alpha
Helix 12
AB3
I
58 60Right-handed 310
Helix 13
AB4
I
65 79Right-handed alpha
Helix 14
AB5
I
82 93Right-handed alpha
Helix 15
AB6
I
102 113Right-handed alpha
Helix 16
AB7
I
118 129Right-handed alpha
Helix 17
AB8
I
139 148Right-handed alpha
Helix 18
AB9
A
46 48Right-handed 310
Helix 19
AC1
A
61 65Right-handed 310
Helix 20
AC2
A
69 83Right-handed alpha
Helix 21
AC3
A
108 116Right-handed alpha
Helix 22
AC4
A
126 141Right-handed alpha
Helix 23
AC5
A
156 171Right-handed alpha
Helix 24
AC6
A
177 185Right-handed alpha
Helix 25
AC7
A
185 193Right-handed alpha
Helix 26
AC8
A
246 255Right-handed alpha
Helix 27
AC9
A
256 264Right-handed alpha
Helix 28
AD1
A
267 270Right-handed 310
Helix 29
AD2
A
271 276Right-handed alpha
Helix 30
AD3
A
284 291Right-handed alpha
Helix 31
AD4
A
297 304Right-handed alpha
Helix 32
AD5
A
312 327Right-handed alpha
Helix 33
AD6
A
330 350Right-handed alpha
Helix 34
AD7
A
366 379Right-handed alpha
Helix 35
AD8
A
382 392Right-handed alpha
Helix 36
AD9
A
412 443Right-handed alpha
Helix 37
AE1
A
467 489Right-handed alpha
Helix 38
AE2
A
489 500Right-handed alpha
Helix 39
AE3
A
511 520Right-handed alpha
Helix 40
AE4
A
524 534Right-handed alpha
Helix 41
AE5
A
539 551Right-handed alpha
Helix 42
AE6
A
559 563Right-handed 310
Helix 43
AE7
A
567 571Right-handed 310
Helix 44
AE8
A
572 574Right-handed 310
Helix 45
AE9
A
592 597Right-handed alpha
Helix 46
AF1
A
602 611Right-handed alpha
Helix 47
AF2
A
614 622Right-handed alpha
Helix 48
AF3
A
642 661Right-handed alpha
Helix 49
AF4
A
681 692Right-handed alpha
Helix 50
AF5
A
693 702Right-handed alpha
Helix 51
AF6
A
711 720Right-handed alpha
Helix 52
AF7
A
723 728Right-handed alpha
Helix 53
AF8
A
730 742Right-handed alpha
Helix 54
AF9
A
762 770Right-handed alpha
Helix 55
AG1
A
773 829Right-handed alpha
Helix 56
AG2
A
833 860Right-handed alpha
Helix 57
AG3
A
863 888Right-handed alpha
Helix 58
AG4
A
891 920Right-handed alpha
Helix 59
AG5
A
922 979Right-handed alpha
Helix 60
AG6
A
982 1021Right-handed alpha
Helix 61
AG7
A
1081 1088Right-handed alpha
Helix 62
AG8
A
1095 1119Right-handed alpha
Helix 63
AG9
A
1131 1136Right-handed alpha
Helix 64
AH1
A
1177 1181Right-handed 310
Helix 65
AH2
A
1230 1235Right-handed alpha
Helix 66
AH3
A
1245 1255Right-handed alpha
Helix 67
AH4
A
1257 1268Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 8W41. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
100 101first strand
Strand 2
I
137 138anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
28 33anti-parallel
Strand 3
A
16 21anti-parallel
Strand 4
A
7 10anti-parallel
Strand 5
A
49 50anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
93 97anti-parallel
Strand 3
A
662 669parallel
Strand 4
A
145 150parallel
Strand 5
A
450 456parallel
Strand 6
A
207 214anti-parallel
Strand 7
A
224 228anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 195first strand
Strand 2
A
203 204anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 354first strand
Strand 2
A
362 364anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
557 558first strand
Strand 2
A
576 580anti-parallel
Strand 3
A
585 589anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
707 710first strand
Strand 2
A
755 758anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1168 1174first strand
Strand 2
A
1192 1198anti-parallel
Strand 3
A
1201 1208anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il