Analysis of interatomic Contacts of Structural Units in PDB entry:
8W4A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W4A entry

There are 2 chains in PDB entry 8W4A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 75ILE 663
A
 ALA 75ILE 663
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 39 helices in PDB entry 8W4A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
191 215Right-handed alpha
Helix 2
AA2
B
268 287Right-handed alpha
Helix 3
AA3
B
288 296Right-handed 310
Helix 4
AA4
B
308 332Right-handed alpha
Helix 5
AA5
B
334 356Right-handed alpha
Helix 6
AA6
B
367 371Right-handed 310
Helix 7
AA7
B
375 394Right-handed alpha
Helix 8
AA8
B
411 416Right-handed alpha
Helix 9
AA9
B
417 438Right-handed alpha
Helix 10
AB1
B
454 458Right-handed 310
Helix 11
AB2
B
465 475Right-handed alpha
Helix 12
AB3
B
476 480Right-handed 310
Helix 13
AB4
B
484 488Right-handed 310
Helix 14
AB5
B
503 524Right-handed alpha
Helix 15
AB6
B
527 551Right-handed alpha
Helix 16
AB7
B
567 590Right-handed alpha
Helix 17
AB8
B
600 605Right-handed alpha
Helix 18
AB9
B
606 617Right-handed alpha
Helix 19
AC1
B
632 657Right-handed alpha
Helix 20
AC2
A
191 215Right-handed alpha
Helix 21
AC3
A
268 287Right-handed alpha
Helix 22
AC4
A
288 296Right-handed 310
Helix 23
AC5
A
304 307Right-handed 310
Helix 24
AC6
A
308 332Right-handed alpha
Helix 25
AC7
A
334 356Right-handed alpha
Helix 26
AC8
A
367 371Right-handed 310
Helix 27
AC9
A
375 394Right-handed alpha
Helix 28
AD1
A
411 416Right-handed alpha
Helix 29
AD2
A
417 438Right-handed alpha
Helix 30
AD3
A
454 458Right-handed 310
Helix 31
AD4
A
465 475Right-handed alpha
Helix 32
AD5
A
476 480Right-handed 310
Helix 33
AD6
A
484 488Right-handed 310
Helix 34
AD7
A
503 524Right-handed alpha
Helix 35
AD8
A
527 551Right-handed alpha
Helix 36
AD9
A
567 590Right-handed alpha
Helix 37
AE1
A
600 605Right-handed alpha
Helix 38
AE2
A
606 617Right-handed alpha
Helix 39
AE3
A
632 657Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8W4A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 132first strand
Strand 2
B
81 88anti-parallel
Strand 3
B
162 169parallel
Strand 4
B
177 185anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 115first strand
Strand 2
B
95 101anti-parallel
Strand 3
B
137 143anti-parallel
Strand 4
B
148 155anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 132first strand
Strand 2
A
81 88anti-parallel
Strand 3
A
162 169parallel
Strand 4
A
177 185anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 115first strand
Strand 2
A
95 101anti-parallel
Strand 3
A
137 143anti-parallel
Strand 4
A
148 155anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il