Analysis of interatomic Contacts of Structural Units in PDB entry:
8W4I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W4I entry

There is 1 chain in PDB entry 8W4I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 99LYS 974
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8W4I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
122 124Right-handed 310
Helix 2
AA2
A
137 141Right-handed 310
Helix 3
AA3
A
158 168Right-handed alpha
Helix 4
AA4
A
168 176Right-handed alpha
Helix 5
AA5
A
187 190Right-handed 310
Helix 6
AA6
A
195 200Right-handed 310
Helix 7
AA7
A
207 223Right-handed alpha
Helix 8
AA8
A
248 264Right-handed alpha
Helix 9
AA9
A
284 288Right-handed 310
Helix 10
AB1
A
290 295Right-handed alpha
Helix 11
AB2
A
296 298Right-handed 310
Helix 12
AB3
A
306 313Right-handed alpha
Helix 13
AB4
A
325 335Right-handed alpha
Helix 14
AB5
A
338 340Right-handed 310
Helix 15
AB6
A
379 387Right-handed alpha
Helix 16
AB7
A
403 406Right-handed 310
Helix 17
AB8
A
429 441Right-handed alpha
Helix 18
AB9
A
455 464Right-handed alpha
Helix 19
AC1
A
469 473Right-handed 310
Helix 20
AC2
A
492 496Right-handed 310
Helix 21
AC3
A
514 518Right-handed 310
Helix 22
AC4
A
519 523Right-handed 310
Helix 23
AC5
A
578 582Right-handed 310
Helix 24
AC6
A
601 617Right-handed alpha
Helix 25
AC7
A
656 661Right-handed alpha
Helix 26
AC8
A
674 683Right-handed alpha
Helix 27
AC9
A
697 702Right-handed alpha
Helix 28
AD1
A
776 781Right-handed alpha
Helix 29
AD2
A
782 785Right-handed 310
Helix 30
AD3
A
839 843Right-handed 310
Helix 31
AD4
A
850 855Right-handed alpha
Helix 32
AD5
A
911 926Right-handed alpha
Helix 33
AD6
A
933 953Right-handed alpha
Helix 34
AD7
A
957 974Right-handed alpha
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There are 10 sheets in PDB entry 8W4I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 120first strand
Strand 2
A
147 151parallel
Strand 3
A
179 185parallel
Strand 4
A
230 235parallel
Strand 5
A
276 281parallel
Strand 6
A
300 304parallel
Strand 7
A
342 347parallel
Strand 8
A
397 401parallel
Strand 9
A
114 120parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 316first strand
Strand 2
A
321 323anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 482first strand
Strand 2
A
501 505parallel
Strand 3
A
552 556parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
512 513first strand
Strand 2
A
563 565parallel
Strand 3
A
587 589parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
525 526first strand
Strand 2
A
547 548anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
644 647first strand
Strand 2
A
748 754parallel
Strand 3
A
731 738anti-parallel
Strand 4
A
709 714anti-parallel
Strand 5
A
719 720anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
654 655first strand
Strand 2
A
724 725anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
685 686first strand
Strand 2
A
689 690anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
762 763first strand
Strand 2
A
901 907anti-parallel
Strand 3
A
812 819anti-parallel
Strand 4
A
870 874anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
769 773first strand
Strand 2
A
800 806anti-parallel
Strand 3
A
882 888anti-parallel
Strand 4
A
832 837anti-parallel
Strand 5
A
859 865anti-parallel
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