Analysis of interatomic Contacts of Structural Units in PDB entry:
8W4J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8W4J entry

There are 8 chains in PDB entry 8W4J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 65	GLY 554
B	ASN 65	GLY 554
C	PRO 64	GLY 554
D	PRO 64	GLY 554
E	PRO 64	GLY 554
F	ASN 65	GLY 554
I	VAL 23	GLU 600
J	VAL 23	GLU 600

There are165 helices in PDB entry 8W4J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	67	88	Right-handed alpha
Helix 2	AA2	A	99	102	Right-handed 310
Helix 3	AA3	A	103	110	Right-handed alpha
Helix 4	AA4	A	157	175	Right-handed alpha
Helix 5	AA5	A	189	193	Right-handed 310
Helix 6	AA6	A	194	212	Right-handed alpha
Helix 7	AA7	A	229	244	Right-handed alpha
Helix 8	AA8	A	245	248	Right-handed 310
Helix 9	AA9	A	250	255	Right-handed 310
Helix 10	AB1	A	270	285	Right-handed alpha
Helix 11	AB2	A	286	294	Right-handed alpha
Helix 12	AB3	A	310	323	Right-handed alpha
Helix 13	AB4	A	344	355	Right-handed alpha
Helix 14	AB5	A	370	374	Right-handed 310
Helix 15	AB6	A	410	420	Right-handed alpha
Helix 16	AB7	A	426	431	Right-handed alpha
Helix 17	AB8	A	432	448	Right-handed alpha
Helix 18	AB9	A	455	478	Right-handed alpha
Helix 19	AC1	A	490	499	Right-handed alpha
Helix 20	AC2	A	501	528	Right-handed alpha
Helix 21	AC3	A	533	552	Right-handed alpha
Helix 22	AC4	B	66	86	Right-handed alpha
Helix 23	AC5	B	103	110	Right-handed alpha
Helix 24	AC6	B	157	175	Right-handed alpha
Helix 25	AC7	B	189	193	Right-handed 310
Helix 26	AC8	B	194	211	Right-handed alpha
Helix 27	AC9	B	229	244	Right-handed alpha
Helix 28	AD1	B	245	248	Right-handed 310
Helix 29	AD2	B	250	255	Right-handed 310
Helix 30	AD3	B	270	285	Right-handed alpha
Helix 31	AD4	B	286	294	Right-handed alpha
Helix 32	AD5	B	310	322	Right-handed alpha
Helix 33	AD6	B	344	355	Right-handed alpha
Helix 34	AD7	B	410	420	Right-handed alpha
Helix 35	AD8	B	426	431	Right-handed alpha
Helix 36	AD9	B	432	448	Right-handed alpha
Helix 37	AE1	B	455	475	Right-handed alpha
Helix 38	AE2	B	490	499	Right-handed alpha
Helix 39	AE3	B	501	526	Right-handed alpha
Helix 40	AE4	B	533	554	Right-handed alpha
Helix 41	AE5	C	65	87	Right-handed alpha
Helix 42	AE6	C	98	103	Right-handed alpha
Helix 43	AE7	C	105	110	Right-handed alpha
Helix 44	AE8	C	157	175	Right-handed alpha
Helix 45	AE9	C	189	193	Right-handed 310
Helix 46	AF1	C	194	212	Right-handed alpha
Helix 47	AF2	C	230	243	Right-handed alpha
Helix 48	AF3	C	244	248	Right-handed 310
Helix 49	AF4	C	250	255	Right-handed 310
Helix 50	AF5	C	259	263	Right-handed 310
Helix 51	AF6	C	270	285	Right-handed alpha
Helix 52	AF7	C	286	294	Right-handed alpha
Helix 53	AF8	C	310	322	Right-handed alpha
Helix 54	AF9	C	344	355	Right-handed alpha
Helix 55	AG1	C	370	374	Right-handed 310
Helix 56	AG2	C	392	396	Right-handed 310
Helix 57	AG3	C	410	420	Right-handed alpha
Helix 58	AG4	C	426	431	Right-handed alpha
Helix 59	AG5	C	432	448	Right-handed alpha
Helix 60	AG6	C	455	479	Right-handed alpha
Helix 61	AG7	C	490	499	Right-handed alpha
Helix 62	AG8	C	501	528	Right-handed alpha
Helix 63	AG9	C	533	552	Right-handed alpha
Helix 64	AH1	D	65	89	Right-handed alpha
Helix 65	AH2	D	100	102	Right-handed 310
Helix 66	AH3	D	103	110	Right-handed alpha
Helix 67	AH4	D	157	175	Right-handed alpha
Helix 68	AH5	D	189	193	Right-handed 310
Helix 69	AH6	D	194	213	Right-handed alpha
Helix 70	AH7	D	229	241	Right-handed alpha
Helix 71	AH8	D	250	254	Right-handed 310
Helix 72	AH9	D	259	263	Right-handed 310
Helix 73	AI1	D	270	285	Right-handed alpha
Helix 74	AI2	D	286	291	Right-handed alpha
Helix 75	AI3	D	310	323	Right-handed alpha
Helix 76	AI4	D	344	355	Right-handed alpha
Helix 77	AI5	D	370	374	Right-handed 310
Helix 78	AI6	D	392	396	Right-handed 310
Helix 79	AI7	D	410	420	Right-handed alpha
Helix 80	AI8	D	426	431	Right-handed alpha
Helix 81	AI9	D	432	448	Right-handed alpha
Helix 82	AJ1	D	455	478	Right-handed alpha
Helix 83	AJ2	D	490	499	Right-handed alpha
Helix 84	AJ3	D	501	528	Right-handed alpha
Helix 85	AJ4	D	533	552	Right-handed alpha
Helix 86	AJ5	E	65	86	Right-handed alpha
Helix 87	AJ6	E	103	110	Right-handed alpha
Helix 88	AJ7	E	157	175	Right-handed alpha
Helix 89	AJ8	E	189	193	Right-handed 310
Helix 90	AJ9	E	194	211	Right-handed alpha
Helix 91	AK1	E	229	244	Right-handed alpha
Helix 92	AK2	E	250	255	Right-handed 310
Helix 93	AK3	E	270	285	Right-handed alpha
Helix 94	AK4	E	286	294	Right-handed alpha
Helix 95	AK5	E	310	323	Right-handed alpha
Helix 96	AK6	E	344	355	Right-handed alpha
Helix 97	AK7	E	370	374	Right-handed 310
Helix 98	AK8	E	392	396	Right-handed 310
Helix 99	AK9	E	410	420	Right-handed alpha
Helix 100	AL1	E	426	431	Right-handed alpha
Helix 101	AL2	E	432	448	Right-handed alpha
Helix 102	AL3	E	455	478	Right-handed alpha
Helix 103	AL4	E	490	499	Right-handed alpha
Helix 104	AL5	E	501	528	Right-handed alpha
Helix 105	AL6	E	533	554	Right-handed alpha
Helix 106	AL7	F	66	89	Right-handed alpha
Helix 107	AL8	F	99	102	Right-handed 310
Helix 108	AL9	F	103	110	Right-handed alpha
Helix 109	AM1	F	157	175	Right-handed alpha
Helix 110	AM2	F	189	193	Right-handed 310
Helix 111	AM3	F	194	212	Right-handed alpha
Helix 112	AM4	F	229	241	Right-handed alpha
Helix 113	AM5	F	250	255	Right-handed 310
Helix 114	AM6	F	259	263	Right-handed 310
Helix 115	AM7	F	270	285	Right-handed alpha
Helix 116	AM8	F	286	293	Right-handed alpha
Helix 117	AM9	F	310	323	Right-handed alpha
Helix 118	AN1	F	344	355	Right-handed alpha
Helix 119	AN2	F	410	420	Right-handed alpha
Helix 120	AN3	F	426	431	Right-handed alpha
Helix 121	AN4	F	432	448	Right-handed alpha
Helix 122	AN5	F	455	476	Right-handed alpha
Helix 123	AN6	F	490	499	Right-handed alpha
Helix 124	AN7	F	501	528	Right-handed alpha
Helix 125	AN8	F	533	552	Right-handed alpha
Helix 126	AN9	I	31	47	Right-handed alpha
Helix 127	AO1	I	64	72	Right-handed alpha
Helix 128	AO2	I	73	80	Right-handed alpha
Helix 129	AO3	I	84	88	Right-handed 310
Helix 130	AO4	I	97	111	Right-handed alpha
Helix 131	AO5	I	120	129	Right-handed alpha
Helix 132	AO6	I	132	146	Right-handed alpha
Helix 133	AO7	I	148	150	Right-handed 310
Helix 134	AO8	I	151	163	Right-handed alpha
Helix 135	AO9	I	167	178	Right-handed alpha
Helix 136	AP1	I	178	183	Right-handed alpha
Helix 137	AP2	I	186	191	Right-handed alpha
Helix 138	AP3	I	193	202	Right-handed alpha
Helix 139	AP4	I	211	222	Right-handed alpha
Helix 140	AP5	I	223	228	Right-handed alpha
Helix 141	AP6	I	238	243	Right-handed alpha
Helix 142	AP7	I	250	261	Right-handed alpha
Helix 143	AP8	I	266	276	Right-handed alpha
Helix 144	AP9	I	277	279	Right-handed 310
Helix 145	AQ1	I	594	600	Right-handed alpha
Helix 146	AQ2	J	31	46	Right-handed alpha
Helix 147	AQ3	J	64	70	Right-handed alpha
Helix 148	AQ4	J	72	80	Right-handed alpha
Helix 149	AQ5	J	83	88	Right-handed 310
Helix 150	AQ6	J	97	111	Right-handed alpha
Helix 151	AQ7	J	119	130	Right-handed alpha
Helix 152	AQ8	J	132	146	Right-handed alpha
Helix 153	AQ9	J	148	151	Right-handed 310
Helix 154	AR1	J	152	163	Right-handed alpha
Helix 155	AR2	J	166	185	Right-handed alpha
Helix 156	AR3	J	186	191	Right-handed alpha
Helix 157	AR4	J	192	202	Right-handed alpha
Helix 158	AR5	J	209	222	Right-handed alpha
Helix 159	AR6	J	223	228	Right-handed alpha
Helix 160	AR7	J	238	244	Right-handed 310
Helix 161	AR8	J	250	260	Right-handed alpha
Helix 162	AR9	J	264	279	Right-handed alpha
Helix 163	AS1	J	280	287	Right-handed 310
Helix 164	AS2	J	502	506	Right-handed 310
Helix 165	AS3	J	594	599	Right-handed alpha

There are 27 sheets in PDB entry 8W4J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	180	186	parallel
Strand 3	A	146	147	parallel
Strand 4	A	220	221	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	180	186	parallel
Strand 3	A	129	138	anti-parallel
Strand 4	A	114	123	anti-parallel
Strand 5	E	114	123	anti-parallel
Strand 6	E	129	138	anti-parallel
Strand 7	E	180	186	anti-parallel
Strand 8	E	146	152	parallel
Strand 9	E	221	223	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	338	first strand
Strand 2	A	326	331	anti-parallel
Strand 3	A	303	307	parallel
Strand 4	A	378	381	parallel
Strand 5	A	400	402	parallel
Strand 6	A	423	425	parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	223	first strand
Strand 2	B	147	152	parallel
Strand 3	B	182	186	parallel
Strand 4	B	129	138	anti-parallel
Strand 5	B	114	123	anti-parallel
Strand 6	D	114	122	anti-parallel
Strand 7	D	130	138	anti-parallel
Strand 8	D	182	187	anti-parallel
Strand 9	D	146	153	parallel
Strand 10	D	220	221	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	367	first strand
Strand 2	B	336	338	anti-parallel
Strand 3	B	326	331	anti-parallel
Strand 4	B	303	307	parallel
Strand 5	B	378	380	parallel
Strand 6	B	400	402	parallel
Strand 7	B	423	425	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	153	first strand
Strand 2	C	182	187	parallel
Strand 3	C	129	138	anti-parallel
Strand 4	C	114	123	anti-parallel
Strand 5	F	114	123	anti-parallel
Strand 6	F	129	138	anti-parallel
Strand 7	F	182	187	anti-parallel
Strand 8	F	152	153	parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	153	first strand
Strand 2	C	182	187	parallel
Strand 3	C	129	138	anti-parallel
Strand 4	C	114	123	anti-parallel
Strand 5	F	114	123	anti-parallel
Strand 6	F	129	138	anti-parallel
Strand 7	F	182	187	anti-parallel
Strand 8	F	146	149	parallel
Strand 9	F	220	223	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	147	first strand
Strand 2	C	220	221	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	303	306	first strand
Strand 2	C	326	330	parallel
Strand 3	C	337	338	anti-parallel
Strand 4	C	365	366	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	400	402	first strand
Strand 2	C	423	425	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	338	first strand
Strand 2	D	326	331	anti-parallel
Strand 3	D	303	307	parallel
Strand 4	D	378	381	parallel
Strand 5	D	400	402	parallel
Strand 6	D	423	425	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	337	338	first strand
Strand 2	E	326	331	anti-parallel
Strand 3	E	303	307	parallel
Strand 4	E	378	381	parallel
Strand 5	E	400	402	parallel
Strand 6	E	423	425	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	337	338	first strand
Strand 2	F	326	330	anti-parallel
Strand 3	F	303	307	parallel
Strand 4	F	378	381	parallel
Strand 5	F	400	402	parallel
Strand 6	F	423	425	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	417	418	first strand
Strand 2	I	427	428	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	442	444	first strand
Strand 2	I	447	449	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	488	491	first strand
Strand 2	I	494	497	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	552	553	first strand
Strand 2	I	558	559	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	565	567	first strand
Strand 2	I	572	574	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	55	56	first strand
Strand 2	J	59	60	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	313	314	first strand
Strand 2	J	306	307	anti-parallel
Strand 3	J	583	584	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	319	322	first strand
Strand 2	J	327	330	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	343	347	first strand
Strand 2	J	350	354	anti-parallel
Strand 3	J	370	373	anti-parallel
Strand 4	J	378	380	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	394	397	first strand
Strand 2	J	400	403	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	442	443	first strand
Strand 2	J	448	449	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	454	455	first strand
Strand 2	J	458	459	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	538	542	first strand
Strand 2	J	545	549	anti-parallel
Strand 3	J	564	566	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	552	553	first strand
Strand 2	J	558	559	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8W4J

Analysis of interatomic Contacts of Structural Units in PDB entry:
8W4J