Analysis of interatomic Contacts of Structural Units in PDB entry:
8W52

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8W52 entry

There are 16 chains in PDB entry 8W52 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 3	GLY 113
B	ALA 3	GLY 113
C	ALA 3	GLU 111
D	ALA 3	VAL 109
E	ALA 3	GLY 113
F	ALA 3	GLY 113
G	LEU 8	GLY 113
H	VAL 7	GLY 113
I	VAL 7	GLU 111
J	VAL 7	LEU 108
K	ASN 5	THR 112
L	VAL 7	THR 112
M	SER 6	LEU 108
N	VAL 7	GLU 111
O	ALA 3	GLU 111
P	ALA 3	VAL 109

There are123 helices in PDB entry 8W52. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	8	Right-handed alpha
Helix 2	AA2	A	10	17	Right-handed alpha
Helix 3	AA3	A	30	44	Right-handed alpha
Helix 4	AA4	A	47	52	Right-handed 310
Helix 5	AA5	A	53	65	Right-handed alpha
Helix 6	AA6	A	66	68	Right-handed 310
Helix 7	AA7	A	72	90	Right-handed alpha
Helix 8	AA8	A	96	112	Right-handed alpha
Helix 9	AA9	B	4	8	Right-handed alpha
Helix 10	AB1	B	10	17	Right-handed alpha
Helix 11	AB2	B	30	44	Right-handed alpha
Helix 12	AB3	B	47	52	Right-handed 310
Helix 13	AB4	B	53	65	Right-handed alpha
Helix 14	AB5	B	66	68	Right-handed 310
Helix 15	AB6	B	72	90	Right-handed alpha
Helix 16	AB7	B	96	111	Right-handed alpha
Helix 17	AB8	C	4	8	Right-handed alpha
Helix 18	AB9	C	10	17	Right-handed alpha
Helix 19	AC1	C	30	45	Right-handed alpha
Helix 20	AC2	C	47	52	Right-handed 310
Helix 21	AC3	C	53	65	Right-handed alpha
Helix 22	AC4	C	66	68	Right-handed 310
Helix 23	AC5	C	72	91	Right-handed alpha
Helix 24	AC6	C	96	111	Right-handed alpha
Helix 25	AC7	D	4	8	Right-handed alpha
Helix 26	AC8	D	10	17	Right-handed alpha
Helix 27	AC9	D	31	44	Right-handed alpha
Helix 28	AD1	D	47	52	Right-handed 310
Helix 29	AD2	D	53	65	Right-handed alpha
Helix 30	AD3	D	66	68	Right-handed 310
Helix 31	AD4	D	72	90	Right-handed alpha
Helix 32	AD5	D	96	109	Right-handed alpha
Helix 33	AD6	E	3	7	Right-handed 310
Helix 34	AD7	E	10	17	Right-handed alpha
Helix 35	AD8	E	30	42	Right-handed alpha
Helix 36	AD9	E	47	52	Right-handed 310
Helix 37	AE1	E	53	65	Right-handed alpha
Helix 38	AE2	E	66	68	Right-handed 310
Helix 39	AE3	E	72	90	Right-handed alpha
Helix 40	AE4	E	96	112	Right-handed alpha
Helix 41	AE5	F	4	8	Right-handed alpha
Helix 42	AE6	F	10	17	Right-handed alpha
Helix 43	AE7	F	30	42	Right-handed alpha
Helix 44	AE8	F	47	52	Right-handed 310
Helix 45	AE9	F	53	65	Right-handed alpha
Helix 46	AF1	F	66	71	Right-handed 310
Helix 47	AF2	F	72	90	Right-handed alpha
Helix 48	AF3	F	96	111	Right-handed alpha
Helix 49	AF4	G	10	17	Right-handed alpha
Helix 50	AF5	G	30	44	Right-handed alpha
Helix 51	AF6	G	47	52	Right-handed 310
Helix 52	AF7	G	53	65	Right-handed alpha
Helix 53	AF8	G	66	68	Right-handed 310
Helix 54	AF9	G	72	91	Right-handed alpha
Helix 55	AG1	G	96	112	Right-handed alpha
Helix 56	AG2	H	10	17	Right-handed alpha
Helix 57	AG3	H	30	42	Right-handed alpha
Helix 58	AG4	H	43	45	Right-handed 310
Helix 59	AG5	H	47	52	Right-handed 310
Helix 60	AG6	H	53	65	Right-handed alpha
Helix 61	AG7	H	66	68	Right-handed 310
Helix 62	AG8	H	72	90	Right-handed alpha
Helix 63	AG9	H	96	112	Right-handed alpha
Helix 64	AH1	I	10	17	Right-handed alpha
Helix 65	AH2	I	31	42	Right-handed alpha
Helix 66	AH3	I	47	52	Right-handed 310
Helix 67	AH4	I	53	65	Right-handed alpha
Helix 68	AH5	I	66	68	Right-handed 310
Helix 69	AH6	I	72	90	Right-handed alpha
Helix 70	AH7	I	96	111	Right-handed alpha
Helix 71	AH8	J	10	18	Right-handed alpha
Helix 72	AH9	J	30	42	Right-handed alpha
Helix 73	AI1	J	47	52	Right-handed 310
Helix 74	AI2	J	53	65	Right-handed alpha
Helix 75	AI3	J	66	71	Right-handed 310
Helix 76	AI4	J	72	90	Right-handed alpha
Helix 77	AI5	J	96	107	Right-handed alpha
Helix 78	AI6	K	10	17	Right-handed alpha
Helix 79	AI7	K	30	43	Right-handed alpha
Helix 80	AI8	K	47	52	Right-handed 310
Helix 81	AI9	K	53	65	Right-handed alpha
Helix 82	AJ1	K	66	68	Right-handed 310
Helix 83	AJ2	K	72	90	Right-handed alpha
Helix 84	AJ3	K	96	111	Right-handed alpha
Helix 85	AJ4	L	9	17	Right-handed alpha
Helix 86	AJ5	L	30	42	Right-handed alpha
Helix 87	AJ6	L	47	52	Right-handed 310
Helix 88	AJ7	L	53	65	Right-handed alpha
Helix 89	AJ8	L	66	68	Right-handed 310
Helix 90	AJ9	L	72	90	Right-handed alpha
Helix 91	AK1	L	96	111	Right-handed alpha
Helix 92	AK2	M	10	17	Right-handed alpha
Helix 93	AK3	M	30	45	Right-handed alpha
Helix 94	AK4	M	47	52	Right-handed 310
Helix 95	AK5	M	53	65	Right-handed alpha
Helix 96	AK6	M	66	68	Right-handed 310
Helix 97	AK7	M	72	90	Right-handed alpha
Helix 98	AK8	M	96	106	Right-handed alpha
Helix 99	AK9	N	10	17	Right-handed alpha
Helix 100	AL1	N	30	44	Right-handed alpha
Helix 101	AL2	N	47	52	Right-handed 310
Helix 102	AL3	N	53	65	Right-handed alpha
Helix 103	AL4	N	66	68	Right-handed 310
Helix 104	AL5	N	72	90	Right-handed alpha
Helix 105	AL6	N	96	111	Right-handed alpha
Helix 106	AL7	O	4	8	Right-handed alpha
Helix 107	AL8	O	10	17	Right-handed alpha
Helix 108	AL9	O	31	42	Right-handed alpha
Helix 109	AM1	O	43	45	Right-handed 310
Helix 110	AM2	O	47	52	Right-handed 310
Helix 111	AM3	O	53	65	Right-handed alpha
Helix 112	AM4	O	67	71	Right-handed 310
Helix 113	AM5	O	72	90	Right-handed alpha
Helix 114	AM6	O	97	111	Right-handed alpha
Helix 115	AM7	P	3	7	Right-handed 310
Helix 116	AM8	P	10	17	Right-handed alpha
Helix 117	AM9	P	31	45	Right-handed alpha
Helix 118	AN1	P	47	52	Right-handed 310
Helix 119	AN2	P	53	65	Right-handed alpha
Helix 120	AN3	P	66	71	Right-handed 310
Helix 121	AN4	P	72	90	Right-handed alpha
Helix 122	AN5	P	96	105	Right-handed alpha
Helix 123	AN6	P	106	109	Right-handed 310

There are no sheets in PDB entry 8W52

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8W52

Analysis of interatomic Contacts of Structural Units in PDB entry:
8W52