Analysis of interatomic Contacts of Structural Units in PDB entry:
8W53


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W53 entry

There are 2 chains in PDB entry 8W53 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 4THR 482
A
 THR 4THR 482
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 8W53. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
16 34Right-handed alpha
Helix 2
AA2
B
49 56Right-handed alpha
Helix 3
AA3
B
74 78Right-handed 310
Helix 4
AA4
B
84 89Right-handed alpha
Helix 5
AA5
B
90 92Right-handed 310
Helix 6
AA6
B
93 106Right-handed alpha
Helix 7
AA7
B
122 124Right-handed 310
Helix 8
AA8
B
125 132Right-handed alpha
Helix 9
AA9
B
143 161Right-handed alpha
Helix 10
AB1
B
163 170Right-handed 310
Helix 11
AB2
B
187 189Right-handed 310
Helix 12
AB3
B
190 195Right-handed alpha
Helix 13
AB4
B
199 213Right-handed alpha
Helix 14
AB5
B
226 236Right-handed alpha
Helix 15
AB6
B
250 254Right-handed 310
Helix 16
AB7
B
260 272Right-handed alpha
Helix 17
AB8
B
290 305Right-handed alpha
Helix 18
AB9
B
336 341Right-handed alpha
Helix 19
AC1
B
352 358Right-handed alpha
Helix 20
AC2
B
370 380Right-handed alpha
Helix 21
AC3
B
392 402Right-handed alpha
Helix 22
AC4
B
428 440Right-handed alpha
Helix 23
AC5
B
444 462Right-handed alpha
Helix 24
AC6
B
465 481Right-handed alpha
Helix 25
AC7
A
16 34Right-handed alpha
Helix 26
AC8
A
49 58Right-handed alpha
Helix 27
AC9
A
59 63Right-handed 310
Helix 28
AD1
A
74 78Right-handed 310
Helix 29
AD2
A
90 92Right-handed 310
Helix 30
AD3
A
93 106Right-handed alpha
Helix 31
AD4
A
120 124Right-handed 310
Helix 32
AD5
A
125 132Right-handed alpha
Helix 33
AD6
A
143 159Right-handed alpha
Helix 34
AD7
A
163 170Right-handed 310
Helix 35
AD8
A
187 189Right-handed 310
Helix 36
AD9
A
190 195Right-handed 310
Helix 37
AE1
A
199 213Right-handed alpha
Helix 38
AE2
A
226 236Right-handed alpha
Helix 39
AE3
A
250 255Right-handed 310
Helix 40
AE4
A
261 272Right-handed alpha
Helix 41
AE5
A
290 305Right-handed alpha
Helix 42
AE6
A
336 341Right-handed alpha
Helix 43
AE7
A
352 359Right-handed alpha
Helix 44
AE8
A
370 380Right-handed alpha
Helix 45
AE9
A
392 402Right-handed alpha
Helix 46
AF1
A
428 441Right-handed alpha
Helix 47
AF2
A
446 462Right-handed alpha
Helix 48
AF3
A
465 482Right-handed alpha
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There are 8 sheets in PDB entry 8W53. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 70first strand
Strand 2
B
37 43parallel
Strand 3
B
7 12parallel
Strand 4
B
112 118parallel
Strand 5
B
136 140parallel
Strand 6
B
216 219parallel
Strand 7
B
242 244parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 175first strand
Strand 2
B
184 185anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
345 348first strand
Strand 2
B
307 311parallel
Strand 3
B
278 282parallel
Strand 4
B
362 367parallel
Strand 5
B
384 386parallel
Strand 6
B
407 409parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 314first strand
Strand 2
B
324 325anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 70first strand
Strand 2
A
37 43parallel
Strand 3
A
7 12parallel
Strand 4
A
112 118parallel
Strand 5
A
136 140parallel
Strand 6
A
216 219parallel
Strand 7
A
242 244parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
184 185anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 348first strand
Strand 2
A
307 311parallel
Strand 3
A
278 282parallel
Strand 4
A
362 367parallel
Strand 5
A
384 386parallel
Strand 6
A
407 409parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 314first strand
Strand 2
A
324 325anti-parallel
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