Analysis of interatomic Contacts of Structural Units in PDB entry:
8W56

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8W56 entry

There are 6 chains in PDB entry 8W56 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 8	ILE 1005
B	LEU 22	ILE 1005
C	LEU 22	ILE 1005
D	SER 8	ILE 1005
E	ALA 10	ASP 120
F	ALA 10	ASP 120

There are233 helices in PDB entry 8W56. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	22	Right-handed alpha
Helix 2	AA2	A	23	40	Right-handed alpha
Helix 3	AA3	A	48	53	Right-handed alpha
Helix 4	AA4	A	58	70	Right-handed alpha
Helix 5	AA5	A	80	95	Right-handed alpha
Helix 6	AA6	A	96	108	Right-handed alpha
Helix 7	AA7	A	115	124	Right-handed alpha
Helix 8	AA8	A	136	146	Right-handed alpha
Helix 9	AA9	A	154	158	Right-handed 310
Helix 10	AB1	A	179	183	Right-handed 310
Helix 11	AB2	A	187	192	Right-handed alpha
Helix 12	AB3	A	192	197	Right-handed alpha
Helix 13	AB4	A	197	211	Right-handed alpha
Helix 14	AB5	A	222	233	Right-handed alpha
Helix 15	AB6	A	254	265	Right-handed alpha
Helix 16	AB7	A	272	274	Right-handed 310
Helix 17	AB8	A	282	298	Right-handed alpha
Helix 18	AB9	A	304	317	Right-handed alpha
Helix 19	AC1	A	318	321	Right-handed 310
Helix 20	AC2	A	326	334	Right-handed alpha
Helix 21	AC3	A	355	366	Right-handed alpha
Helix 22	AC4	A	367	372	Right-handed alpha
Helix 23	AC5	A	374	392	Right-handed alpha
Helix 24	AC6	A	411	415	Right-handed 310
Helix 25	AC7	A	417	427	Right-handed alpha
Helix 26	AC8	A	431	445	Right-handed alpha
Helix 27	AC9	A	447	462	Right-handed alpha
Helix 28	AD1	A	467	491	Right-handed alpha
Helix 29	AD2	A	508	519	Right-handed alpha
Helix 30	AD3	A	526	531	Right-handed alpha
Helix 31	AD4	A	532	539	Right-handed alpha
Helix 32	AD5	A	540	547	Right-handed 310
Helix 33	AD6	A	551	558	Right-handed alpha
Helix 34	AD7	A	559	563	Right-handed 310
Helix 35	AD8	A	579	598	Right-handed alpha
Helix 36	AD9	A	600	604	Right-handed 310
Helix 37	AE1	A	605	634	Right-handed alpha
Helix 38	AE2	A	648	658	Right-handed alpha
Helix 39	AE3	A	660	671	Right-handed alpha
Helix 40	AE4	A	680	702	Right-handed alpha
Helix 41	AE5	A	705	723	Right-handed alpha
Helix 42	AE6	A	729	741	Right-handed alpha
Helix 43	AE7	A	750	761	Right-handed alpha
Helix 44	AE8	A	768	786	Right-handed alpha
Helix 45	AE9	A	800	812	Right-handed alpha
Helix 46	AF1	A	817	826	Right-handed alpha
Helix 47	AF2	A	831	841	Right-handed alpha
Helix 48	AF3	A	842	845	Right-handed 310
Helix 49	AF4	A	846	857	Right-handed alpha
Helix 50	AF5	A	861	872	Right-handed alpha
Helix 51	AF6	A	878	895	Right-handed alpha
Helix 52	AF7	A	912	922	Right-handed alpha
Helix 53	AF8	A	929	934	Right-handed 310
Helix 54	AF9	A	937	943	Right-handed alpha
Helix 55	AG1	A	957	961	Right-handed 310
Helix 56	AG2	A	963	972	Right-handed alpha
Helix 57	AG3	A	977	991	Right-handed alpha
Helix 58	AG4	A	993	1004	Right-handed alpha
Helix 59	AG5	B	23	39	Right-handed alpha
Helix 60	AG6	B	48	53	Right-handed alpha
Helix 61	AG7	B	58	71	Right-handed alpha
Helix 62	AG8	B	82	96	Right-handed alpha
Helix 63	AG9	B	97	109	Right-handed alpha
Helix 64	AH1	B	115	124	Right-handed alpha
Helix 65	AH2	B	136	142	Right-handed alpha
Helix 66	AH3	B	154	158	Right-handed 310
Helix 67	AH4	B	173	177	Right-handed 310
Helix 68	AH5	B	179	183	Right-handed 310
Helix 69	AH6	B	187	192	Right-handed alpha
Helix 70	AH7	B	192	197	Right-handed alpha
Helix 71	AH8	B	197	211	Right-handed alpha
Helix 72	AH9	B	222	233	Right-handed alpha
Helix 73	AI1	B	254	265	Right-handed alpha
Helix 74	AI2	B	282	296	Right-handed alpha
Helix 75	AI3	B	304	317	Right-handed alpha
Helix 76	AI4	B	318	321	Right-handed 310
Helix 77	AI5	B	329	334	Right-handed alpha
Helix 78	AI6	B	355	366	Right-handed alpha
Helix 79	AI7	B	366	371	Right-handed alpha
Helix 80	AI8	B	374	392	Right-handed alpha
Helix 81	AI9	B	411	416	Right-handed alpha
Helix 82	AJ1	B	417	425	Right-handed alpha
Helix 83	AJ2	B	431	445	Right-handed alpha
Helix 84	AJ3	B	447	462	Right-handed alpha
Helix 85	AJ4	B	468	495	Right-handed alpha
Helix 86	AJ5	B	508	520	Right-handed alpha
Helix 87	AJ6	B	532	539	Right-handed alpha
Helix 88	AJ7	B	540	550	Right-handed 310
Helix 89	AJ8	B	551	572	Right-handed alpha
Helix 90	AJ9	B	580	596	Right-handed alpha
Helix 91	AK1	B	600	604	Right-handed 310
Helix 92	AK2	B	605	628	Right-handed alpha
Helix 93	AK3	B	635	639	Right-handed 310
Helix 94	AK4	B	648	659	Right-handed alpha
Helix 95	AK5	B	661	671	Right-handed alpha
Helix 96	AK6	B	672	676	Right-handed 310
Helix 97	AK7	B	680	699	Right-handed alpha
Helix 98	AK8	B	707	723	Right-handed alpha
Helix 99	AK9	B	724	726	Right-handed 310
Helix 100	AL1	B	729	742	Right-handed alpha
Helix 101	AL2	B	750	762	Right-handed alpha
Helix 102	AL3	B	768	785	Right-handed alpha
Helix 103	AL4	B	801	812	Right-handed alpha
Helix 104	AL5	B	819	826	Right-handed alpha
Helix 105	AL6	B	831	840	Right-handed alpha
Helix 106	AL7	B	841	845	Right-handed 310
Helix 107	AL8	B	846	855	Right-handed alpha
Helix 108	AL9	B	862	872	Right-handed alpha
Helix 109	AM1	B	878	896	Right-handed alpha
Helix 110	AM2	B	911	922	Right-handed alpha
Helix 111	AM3	B	930	934	Right-handed 310
Helix 112	AM4	B	937	945	Right-handed alpha
Helix 113	AM5	B	955	962	Right-handed 310
Helix 114	AM6	B	963	972	Right-handed alpha
Helix 115	AM7	B	976	991	Right-handed alpha
Helix 116	AM8	B	993	1003	Right-handed alpha
Helix 117	AM9	C	23	40	Right-handed alpha
Helix 118	AN1	C	48	54	Right-handed alpha
Helix 119	AN2	C	58	71	Right-handed alpha
Helix 120	AN3	C	80	96	Right-handed alpha
Helix 121	AN4	C	97	109	Right-handed alpha
Helix 122	AN5	C	115	123	Right-handed alpha
Helix 123	AN6	C	136	141	Right-handed alpha
Helix 124	AN7	C	173	177	Right-handed 310
Helix 125	AN8	C	179	183	Right-handed 310
Helix 126	AN9	C	186	192	Right-handed alpha
Helix 127	AO1	C	192	197	Right-handed alpha
Helix 128	AO2	C	197	211	Right-handed alpha
Helix 129	AO3	C	222	233	Right-handed alpha
Helix 130	AO4	C	254	264	Right-handed alpha
Helix 131	AO5	C	282	297	Right-handed alpha
Helix 132	AO6	C	304	317	Right-handed alpha
Helix 133	AO7	C	318	321	Right-handed 310
Helix 134	AO8	C	329	334	Right-handed alpha
Helix 135	AO9	C	355	366	Right-handed alpha
Helix 136	AP1	C	367	373	Right-handed 310
Helix 137	AP2	C	374	392	Right-handed alpha
Helix 138	AP3	C	411	416	Right-handed alpha
Helix 139	AP4	C	417	427	Right-handed alpha
Helix 140	AP5	C	431	445	Right-handed alpha
Helix 141	AP6	C	447	462	Right-handed alpha
Helix 142	AP7	C	468	496	Right-handed alpha
Helix 143	AP8	C	508	519	Right-handed alpha
Helix 144	AP9	C	532	539	Right-handed alpha
Helix 145	AQ1	C	540	550	Right-handed 310
Helix 146	AQ2	C	551	571	Right-handed alpha
Helix 147	AQ3	C	581	597	Right-handed alpha
Helix 148	AQ4	C	600	604	Right-handed 310
Helix 149	AQ5	C	605	628	Right-handed alpha
Helix 150	AQ6	C	630	635	Right-handed alpha
Helix 151	AQ7	C	648	658	Right-handed alpha
Helix 152	AQ8	C	660	671	Right-handed alpha
Helix 153	AQ9	C	672	676	Right-handed 310
Helix 154	AR1	C	680	699	Right-handed alpha
Helix 155	AR2	C	705	723	Right-handed alpha
Helix 156	AR3	C	724	726	Right-handed 310
Helix 157	AR4	C	729	743	Right-handed alpha
Helix 158	AR5	C	750	762	Right-handed alpha
Helix 159	AR6	C	768	786	Right-handed alpha
Helix 160	AR7	C	801	812	Right-handed alpha
Helix 161	AR8	C	817	826	Right-handed alpha
Helix 162	AR9	C	831	841	Right-handed alpha
Helix 163	AS1	C	842	845	Right-handed 310
Helix 164	AS2	C	846	855	Right-handed alpha
Helix 165	AS3	C	862	872	Right-handed alpha
Helix 166	AS4	C	878	896	Right-handed alpha
Helix 167	AS5	C	911	922	Right-handed alpha
Helix 168	AS6	C	928	933	Right-handed 310
Helix 169	AS7	C	937	944	Right-handed alpha
Helix 170	AS8	C	950	954	Right-handed 310
Helix 171	AS9	C	958	962	Right-handed 310
Helix 172	AT1	C	963	973	Right-handed alpha
Helix 173	AT2	C	976	991	Right-handed alpha
Helix 174	AT3	C	993	1004	Right-handed alpha
Helix 175	AT4	D	10	22	Right-handed alpha
Helix 176	AT5	D	23	39	Right-handed alpha
Helix 177	AT6	D	48	53	Right-handed alpha
Helix 178	AT7	D	58	72	Right-handed alpha
Helix 179	AT8	D	82	95	Right-handed alpha
Helix 180	AT9	D	97	107	Right-handed alpha
Helix 181	AU1	D	115	123	Right-handed alpha
Helix 182	AU2	D	136	146	Right-handed alpha
Helix 183	AU3	D	154	159	Right-handed alpha
Helix 184	AU4	D	179	183	Right-handed 310
Helix 185	AU5	D	186	192	Right-handed alpha
Helix 186	AU6	D	192	197	Right-handed alpha
Helix 187	AU7	D	197	211	Right-handed alpha
Helix 188	AU8	D	222	234	Right-handed alpha
Helix 189	AU9	D	254	264	Right-handed alpha
Helix 190	AV1	D	282	298	Right-handed alpha
Helix 191	AV2	D	304	317	Right-handed alpha
Helix 192	AV3	D	318	322	Right-handed 310
Helix 193	AV4	D	326	334	Right-handed alpha
Helix 194	AV5	D	355	366	Right-handed alpha
Helix 195	AV6	D	375	391	Right-handed alpha
Helix 196	AV7	D	411	416	Right-handed alpha
Helix 197	AV8	D	417	427	Right-handed alpha
Helix 198	AV9	D	431	446	Right-handed alpha
Helix 199	AW1	D	447	462	Right-handed alpha
Helix 200	AW2	D	467	493	Right-handed alpha
Helix 201	AW3	D	514	519	Right-handed alpha
Helix 202	AW4	D	532	539	Right-handed alpha
Helix 203	AW5	D	540	547	Right-handed 310
Helix 204	AW6	D	551	558	Right-handed alpha
Helix 205	AW7	D	559	563	Right-handed 310
Helix 206	AW8	D	579	598	Right-handed alpha
Helix 207	AW9	D	600	604	Right-handed 310
Helix 208	AX1	D	605	634	Right-handed alpha
Helix 209	AX2	D	648	659	Right-handed alpha
Helix 210	AX3	D	660	671	Right-handed alpha
Helix 211	AX4	D	681	702	Right-handed alpha
Helix 212	AX5	D	705	723	Right-handed alpha
Helix 213	AX6	D	724	726	Right-handed 310
Helix 214	AX7	D	729	743	Right-handed alpha
Helix 215	AX8	D	750	762	Right-handed alpha
Helix 216	AX9	D	768	786	Right-handed alpha
Helix 217	AY1	D	800	812	Right-handed alpha
Helix 218	AY2	D	817	826	Right-handed alpha
Helix 219	AY3	D	832	841	Right-handed alpha
Helix 220	AY4	D	842	845	Right-handed 310
Helix 221	AY5	D	846	857	Right-handed alpha
Helix 222	AY6	D	861	871	Right-handed alpha
Helix 223	AY7	D	878	896	Right-handed alpha
Helix 224	AY8	D	912	922	Right-handed alpha
Helix 225	AY9	D	929	933	Right-handed 310
Helix 226	AZ1	D	937	945	Right-handed alpha
Helix 227	AZ2	D	950	954	Right-handed 310
Helix 228	AZ3	D	955	962	Right-handed 310
Helix 229	AZ4	D	963	972	Right-handed alpha
Helix 230	AZ5	D	977	991	Right-handed alpha
Helix 231	AZ6	D	993	1003	Right-handed alpha
Helix 232	AZ7	E	95	106	Right-handed alpha
Helix 233	AZ8	F	95	104	Right-handed alpha

There are 16 sheets in PDB entry 8W56. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	166	169	parallel
Strand 3	A	128	131	parallel
Strand 4	A	43	46	parallel
Strand 5	A	213	216	parallel
Strand 6	A	244	247	parallel
Strand 7	A	267	270	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	346	348	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	166	169	parallel
Strand 3	B	128	131	parallel
Strand 4	B	42	46	parallel
Strand 5	B	212	216	parallel
Strand 6	B	244	247	parallel
Strand 7	B	267	270	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	341	first strand
Strand 2	B	345	348	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	573	575	first strand
Strand 2	E	15	17	anti-parallel
Strand 3	E	22	24	anti-parallel
Strand 4	E	112	113	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	152	first strand
Strand 2	C	166	169	parallel
Strand 3	C	128	131	parallel
Strand 4	C	42	46	parallel
Strand 5	C	212	216	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	247	first strand
Strand 2	C	267	270	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	340	first strand
Strand 2	C	345	348	anti-parallel
Strand 3	C	395	396	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	573	575	first strand
Strand 2	F	15	17	anti-parallel
Strand 3	F	22	24	anti-parallel
Strand 4	F	112	113	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	152	first strand
Strand 2	D	166	169	parallel
Strand 3	D	128	131	parallel
Strand 4	D	43	46	parallel
Strand 5	D	213	216	parallel
Strand 6	D	244	247	parallel
Strand 7	D	267	270	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	341	first strand
Strand 2	D	345	348	anti-parallel
Strand 3	D	395	396	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	68	first strand
Strand 2	E	37	47	anti-parallel
Strand 3	E	27	33	anti-parallel
Strand 4	E	87	88	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	68	first strand
Strand 2	E	37	47	anti-parallel
Strand 3	E	115	117	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	33	first strand
Strand 2	F	37	38	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	72	first strand
Strand 2	F	62	68	anti-parallel
Strand 3	F	42	48	anti-parallel
Strand 4	F	115	118	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	87	88	first strand
Strand 2	F	93	94	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8W56

Analysis of interatomic Contacts of Structural Units in PDB entry:
8W56