Analysis of interatomic Contacts of Structural Units in PDB entry:
8W5B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W5B entry

There is 1 chain in PDB entry 8W5B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 38PRO 472
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 8W5B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
90 103Right-handed alpha
Helix 2
AA2
A
111 122Right-handed alpha
Helix 3
AA3
A
123 131Right-handed alpha
Helix 4
AA4
A
239 243Right-handed 310
Helix 5
AA5
A
269 273Right-handed 310
Helix 6
AA6
A
290 296Right-handed 310
Helix 7
AA7
A
312 316Right-handed 310
Helix 8
AA8
A
414 418Right-handed 310
Helix 9
AA9
A
455 459Right-handed 310
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There are 10 sheets in PDB entry 8W5B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 151first strand
Strand 2
A
40 46anti-parallel
Strand 3
A
197 200parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 138first strand
Strand 2
A
84 89anti-parallel
Strand 3
A
161 168anti-parallel
Strand 4
A
180 183anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
204 206anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 214first strand
Strand 2
A
228 235anti-parallel
Strand 3
A
299 308anti-parallel
Strand 4
A
256 265anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 277first strand
Strand 2
A
283 288anti-parallel
Strand 3
A
245 250anti-parallel
Strand 4
A
323 328anti-parallel
Strand 5
A
331 332anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 277first strand
Strand 2
A
283 288anti-parallel
Strand 3
A
245 250anti-parallel
Strand 4
A
323 328anti-parallel
Strand 5
A
336 337anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 359first strand
Strand 2
A
344 352anti-parallel
Strand 3
A
406 412anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 359first strand
Strand 2
A
344 352anti-parallel
Strand 3
A
460 464parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 390first strand
Strand 2
A
374 382anti-parallel
Strand 3
A
364 371anti-parallel
Strand 4
A
398 400anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 390first strand
Strand 2
A
374 382anti-parallel
Strand 3
A
364 371anti-parallel
Strand 4
A
423 430anti-parallel
Strand 5
A
442 444anti-parallel
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