Analysis of interatomic Contacts of Structural Units in PDB entry:
8W5D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W5D entry

There are 4 chains in PDB entry 8W5D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 LEU 7TYR 115
c
 ALA 1ALA 131
C
 ALA 1ALA 131
L
 HIS 2GLY 108
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 8W5D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
31 33Right-handed 310
Helix 2
AA2
c
101 116Right-handed alpha
Helix 3
AA3
c
118 127Right-handed alpha
Helix 4
AA4
C
101 116Right-handed alpha
Helix 5
AA5
C
118 127Right-handed alpha
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There are 9 sheets in PDB entry 8W5D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
21 23first strand
Strand 2
H
83 85anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
54 55first strand
Strand 2
H
35 42anti-parallel
Strand 3
H
95 102anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
104 106first strand
Strand 2
C
6 8anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
22 26first strand
Strand 2
c
33 36anti-parallel
Strand 3
c
47 50anti-parallel
Strand 4
c
64 69anti-parallel
Strand 5
c
90 94anti-parallel
Strand 6
C
90 94anti-parallel
Strand 7
C
64 69anti-parallel
Strand 8
C
47 50anti-parallel
Strand 9
C
33 36anti-parallel
Strand 10
C
22 26anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
72 74first strand
Strand 2
c
83 86anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 74first strand
Strand 2
C
83 86anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 5first strand
Strand 2
L
25 26anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
52 53first strand
Strand 2
L
41 44anti-parallel
Strand 3
L
96 97anti-parallel
Strand 4
L
105 106anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
71 72first strand
Strand 2
L
79 80anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il