Analysis of interatomic Contacts of Structural Units in PDB entry:
8W5F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W5F entry

There are 4 chains in PDB entry 8W5F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 ILE 20LEU 122
H
 VAL 21VAL 140
c
 ALA 1ALA 131
C
 ALA 1ALA 131
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 8W5F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
c
101 116Right-handed alpha
Helix 2
AA2
c
118 127Right-handed alpha
Helix 3
AA3
C
101 117Right-handed alpha
Helix 4
AA4
C
118 127Right-handed alpha
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There are 6 sheets in PDB entry 8W5F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
23 24first strand
Strand 2
L
37 42anti-parallel
Strand 3
L
88 93anti-parallel
Strand 4
L
80 84anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
51 52first strand
Strand 2
L
107 108anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
22 24first strand
Strand 2
H
39 44anti-parallel
Strand 3
H
97 100anti-parallel
Strand 4
H
89 92anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
29 30first strand
Strand 2
H
138 139parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
77 79first strand
Strand 2
H
68 70anti-parallel
Strand 3
H
53 58anti-parallel
Strand 4
H
112 117anti-parallel
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There are 12 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
6 11first strand
Strand 2
c
17 23anti-parallel
Strand 3
c
35 36anti-parallel
Strand 4
c
47 52anti-parallel
Strand 5
c
64 74anti-parallel
Strand 6
c
83 94anti-parallel
Strand 7
C
83 97anti-parallel
Strand 8
C
61 74anti-parallel
Strand 9
C
47 52anti-parallel
Strand 10
C
33 37anti-parallel
Strand 11
C
19 26anti-parallel
Strand 12
C
6 8anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il