Analysis of interatomic Contacts of Structural Units in PDB entry:
8W5O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W5O entry

There are 5 chains in PDB entry 8W5O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 VAL 5VAL 126
L
 ILE 5LEU 109
b
 ALA 1TYR 132
B
 ALA 1ALA 131
A
 LYS 2ALA 131
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 8W5O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
31 35Right-handed 310
Helix 2
AA2
b
101 117Right-handed alpha
Helix 3
AA3
b
118 126Right-handed alpha
Helix 4
AA4
B
101 117Right-handed alpha
Helix 5
AA5
B
118 126Right-handed alpha
Helix 6
AA6
A
101 118Right-handed alpha
Helix 7
AA7
A
118 128Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 8W5O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
21 25first strand
Strand 2
H
81 86anti-parallel
Strand 3
H
71 76anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
61 62first strand
Strand 2
H
48 54anti-parallel
Strand 3
H
38 42anti-parallel
Strand 4
H
96 99anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
8 9first strand
Strand 2
L
24 27anti-parallel
Strand 3
L
73 76anti-parallel
Strand 4
L
67 68anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
56 57first strand
Strand 2
L
49 52anti-parallel
Strand 3
L
36 39anti-parallel
Strand 4
L
91 93anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
6 9first strand
Strand 2
b
18 27anti-parallel
Strand 3
b
32 36anti-parallel
Strand 4
b
47 51anti-parallel
Strand 5
b
64 69anti-parallel
Strand 6
b
89 94anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 9first strand
Strand 2
B
18 27anti-parallel
Strand 3
B
32 36anti-parallel
Strand 4
B
47 51anti-parallel
Strand 5
B
64 69anti-parallel
Strand 6
B
89 94anti-parallel
Strand 7
A
90 94anti-parallel
Strand 8
A
65 68anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 74first strand
Strand 2
B
83 86anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
19 21anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
47 49anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il