Analysis of interatomic Contacts of Structural Units in PDB entry:
8W5Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W5Z entry

There are 4 chains in PDB entry 8W5Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 40LYS 372
B
 PHE 1002GLU 1007
C
 ASN 40LYS 372
D
 PHE 1002GLU 1007
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 8W5Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 56Right-handed 310
Helix 2
AA2
A
76 86Right-handed alpha
Helix 3
AA3
A
97 112Right-handed alpha
Helix 4
AA4
A
112 122Right-handed alpha
Helix 5
AA5
A
125 144Right-handed alpha
Helix 6
AA6
A
156 160Right-handed 310
Helix 7
AA7
A
161 169Right-handed alpha
Helix 8
AA8
A
180 191Right-handed alpha
Helix 9
AA9
A
202 225Right-handed alpha
Helix 10
AB1
A
234 240Right-handed alpha
Helix 11
AB2
A
240 253Right-handed alpha
Helix 12
AB3
A
257 261Right-handed 310
Helix 13
AB4
A
262 269Right-handed alpha
Helix 14
AB5
A
280 285Right-handed alpha
Helix 15
AB6
A
301 307Right-handed alpha
Helix 16
AB7
A
307 312Right-handed alpha
Helix 17
AB8
A
313 319Right-handed alpha
Helix 18
AB9
A
333 346Right-handed alpha
Helix 19
AC1
A
346 370Right-handed alpha
Helix 20
AC2
C
53 55Right-handed 310
Helix 21
AC3
C
76 86Right-handed alpha
Helix 22
AC4
C
97 112Right-handed alpha
Helix 23
AC5
C
112 122Right-handed alpha
Helix 24
AC6
C
125 144Right-handed alpha
Helix 25
AC7
C
156 160Right-handed 310
Helix 26
AC8
C
161 169Right-handed alpha
Helix 27
AC9
C
180 191Right-handed alpha
Helix 28
AD1
C
202 225Right-handed alpha
Helix 29
AD2
C
234 240Right-handed alpha
Helix 30
AD3
C
240 253Right-handed alpha
Helix 31
AD4
C
257 261Right-handed 310
Helix 32
AD5
C
262 269Right-handed alpha
Helix 33
AD6
C
280 285Right-handed alpha
Helix 34
AD7
C
301 307Right-handed alpha
Helix 35
AD8
C
307 312Right-handed alpha
Helix 36
AD9
C
313 319Right-handed alpha
Helix 37
AE1
C
333 346Right-handed alpha
Helix 38
AE2
C
346 370Right-handed alpha
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There are 4 sheets in PDB entry 8W5Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 44first strand
Strand 2
C
48 51anti-parallel
Strand 3
C
57 60anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
48 51anti-parallel
Strand 3
C
42 44anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
150 154parallel
Strand 3
A
67 70parallel
Strand 4
A
173 178parallel
Strand 5
A
229 233parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 91first strand
Strand 2
C
150 154parallel
Strand 3
C
67 70parallel
Strand 4
C
173 178parallel
Strand 5
C
229 233parallel
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