Analysis of interatomic Contacts of Structural Units in PDB entry:
8W69

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8W69 entry

There are 9 chains in PDB entry 8W69 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 38	SER 361
C	PRO 38	SER 361
B	PRO 38	SER 361
D	SER 365	ARG 455
F	SER 365	ARG 455
E	SER 365	ARG 455
G	UNK 27	UNK 35
H	UNK 28	UNK 34
I	UNK 28	UNK 34

There are 33 helices in PDB entry 8W69. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	48	Right-handed alpha
Helix 2	AA2	A	107	112	Right-handed alpha
Helix 3	AA3	A	173	177	Right-handed 310
Helix 4	AA4	A	248	262	Right-handed alpha
Helix 5	AA5	A	278	284	Right-handed alpha
Helix 6	AA6	A	301	307	Right-handed alpha
Helix 7	AA7	A	324	335	Right-handed alpha
Helix 8	AA8	C	42	47	Right-handed alpha
Helix 9	AA9	C	107	112	Right-handed alpha
Helix 10	AB1	C	158	162	Right-handed 310
Helix 11	AB2	C	173	177	Right-handed 310
Helix 12	AB3	C	248	262	Right-handed alpha
Helix 13	AB4	C	277	285	Right-handed alpha
Helix 14	AB5	C	301	307	Right-handed alpha
Helix 15	AB6	C	324	335	Right-handed alpha
Helix 16	AB7	B	42	48	Right-handed alpha
Helix 17	AB8	B	49	51	Right-handed 310
Helix 18	AB9	B	107	111	Right-handed 310
Helix 19	AC1	B	158	162	Right-handed 310
Helix 20	AC2	B	173	177	Right-handed 310
Helix 21	AC3	B	247	261	Right-handed alpha
Helix 22	AC4	B	277	285	Right-handed alpha
Helix 23	AC5	B	301	307	Right-handed alpha
Helix 24	AC6	B	324	335	Right-handed alpha
Helix 25	AC7	D	372	376	Right-handed 310
Helix 26	AC8	D	401	406	Right-handed alpha
Helix 27	AC9	D	424	433	Right-handed alpha
Helix 28	AD1	F	372	376	Right-handed 310
Helix 29	AD2	F	401	406	Right-handed alpha
Helix 30	AD3	F	424	434	Right-handed alpha
Helix 31	AD4	E	372	376	Right-handed 310
Helix 32	AD5	E	401	406	Right-handed alpha
Helix 33	AD6	E	424	433	Right-handed alpha

There are 19 sheets in PDB entry 8W69. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	60	first strand
Strand 2	A	88	98	anti-parallel
Strand 3	A	103	106	anti-parallel
Strand 4	A	140	145	anti-parallel
Strand 5	A	126	135	anti-parallel
Strand 6	A	114	120	anti-parallel
Strand 7	A	53	60	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	172	first strand
Strand 2	A	180	191	anti-parallel
Strand 3	A	202	205	anti-parallel
Strand 4	A	243	247	anti-parallel
Strand 5	A	225	232	anti-parallel
Strand 6	A	217	219	anti-parallel
Strand 7	A	167	172	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	268	first strand
Strand 2	A	359	360	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	275	first strand
Strand 2	A	292	297	anti-parallel
Strand 3	A	313	317	anti-parallel
Strand 4	A	320	321	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	275	first strand
Strand 2	A	292	297	anti-parallel
Strand 3	A	313	317	anti-parallel
Strand 4	A	340	347	anti-parallel
Strand 5	A	350	357	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	60	first strand
Strand 2	C	88	98	anti-parallel
Strand 3	C	103	106	anti-parallel
Strand 4	C	140	145	anti-parallel
Strand 5	C	126	135	anti-parallel
Strand 6	C	116	120	anti-parallel
Strand 7	C	53	60	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	172	first strand
Strand 2	C	180	191	anti-parallel
Strand 3	C	202	205	anti-parallel
Strand 4	C	243	247	anti-parallel
Strand 5	C	225	232	anti-parallel
Strand 6	C	217	219	anti-parallel
Strand 7	C	167	172	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	268	first strand
Strand 2	C	359	360	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	275	first strand
Strand 2	C	292	297	anti-parallel
Strand 3	C	313	317	anti-parallel
Strand 4	C	320	321	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	275	first strand
Strand 2	C	292	297	anti-parallel
Strand 3	C	313	317	anti-parallel
Strand 4	C	340	347	anti-parallel
Strand 5	C	350	357	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	60	first strand
Strand 2	B	88	98	anti-parallel
Strand 3	B	103	106	anti-parallel
Strand 4	B	140	145	anti-parallel
Strand 5	B	126	135	anti-parallel
Strand 6	B	116	120	anti-parallel
Strand 7	B	53	60	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	30	31	first strand
Strand 2	B	225	232	anti-parallel
Strand 3	B	243	246	anti-parallel
Strand 4	B	202	205	anti-parallel
Strand 5	B	180	191	anti-parallel
Strand 6	B	167	172	anti-parallel
Strand 7	B	217	219	anti-parallel
Strand 8	B	225	232	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	268	first strand
Strand 2	B	359	360	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	275	first strand
Strand 2	B	292	297	anti-parallel
Strand 3	B	312	317	anti-parallel
Strand 4	B	320	321	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	275	first strand
Strand 2	B	292	297	anti-parallel
Strand 3	B	312	317	anti-parallel
Strand 4	B	341	347	anti-parallel
Strand 5	B	350	356	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	378	381	first strand
Strand 2	D	392	397	anti-parallel
Strand 3	D	413	417	anti-parallel
Strand 4	D	420	421	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	378	381	first strand
Strand 2	D	392	397	anti-parallel
Strand 3	D	413	417	anti-parallel
Strand 4	D	441	445	anti-parallel
Strand 5	D	448	452	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	378	382	first strand
Strand 2	F	392	397	anti-parallel
Strand 3	F	413	417	anti-parallel
Strand 4	F	439	445	anti-parallel
Strand 5	F	448	454	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	378	384	first strand
Strand 2	E	390	397	anti-parallel
Strand 3	E	413	416	anti-parallel
Strand 4	E	439	445	anti-parallel
Strand 5	E	448	454	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8W69

Analysis of interatomic Contacts of Structural Units in PDB entry:
8W69