Analysis of interatomic Contacts of Structural Units in PDB entry:
8W6D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W6D entry

There are 2 chains in PDB entry 8W6D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ALA 578
B
 ALA 2ALA 578
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 8W6D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 11Right-handed alpha
Helix 2
AA2
A
11 24Right-handed alpha
Helix 3
AA3
A
25 31Right-handed alpha
Helix 4
AA4
A
33 52Right-handed alpha
Helix 5
AA5
A
55 60Right-handed alpha
Helix 6
AA6
A
62 70Right-handed alpha
Helix 7
AA7
A
74 80Right-handed alpha
Helix 8
AA8
A
84 103Right-handed alpha
Helix 9
AA9
A
104 118Right-handed alpha
Helix 10
AB1
A
120 136Right-handed alpha
Helix 11
AB2
A
140 163Right-handed alpha
Helix 12
AB3
A
214 232Right-handed alpha
Helix 13
AB4
A
233 235Right-handed 310
Helix 14
AB5
A
240 254Right-handed alpha
Helix 15
AB6
A
262 290Right-handed alpha
Helix 16
AB7
A
305 322Right-handed alpha
Helix 17
AB8
A
326 346Right-handed alpha
Helix 18
AB9
A
353 358Right-handed alpha
Helix 19
AC1
A
369 384Right-handed alpha
Helix 20
AC2
A
409 417Right-handed alpha
Helix 21
AC3
A
418 438Right-handed alpha
Helix 22
AC4
A
439 446Right-handed alpha
Helix 23
AC5
A
447 453Right-handed 310
Helix 24
AC6
A
455 474Right-handed alpha
Helix 25
AC7
A
476 494Right-handed alpha
Helix 26
AC8
A
501 509Right-handed alpha
Helix 27
AC9
A
520 525Right-handed alpha
Helix 28
AD1
A
532 556Right-handed alpha
Helix 29
AD2
A
559 564Right-handed alpha
Helix 30
AD3
A
569 573Right-handed 310
Helix 31
AD4
B
3 11Right-handed alpha
Helix 32
AD5
B
11 24Right-handed alpha
Helix 33
AD6
B
25 31Right-handed alpha
Helix 34
AD7
B
33 52Right-handed alpha
Helix 35
AD8
B
55 60Right-handed alpha
Helix 36
AD9
B
62 70Right-handed alpha
Helix 37
AE1
B
74 80Right-handed alpha
Helix 38
AE2
B
84 103Right-handed alpha
Helix 39
AE3
B
104 118Right-handed alpha
Helix 40
AE4
B
120 136Right-handed alpha
Helix 41
AE5
B
140 163Right-handed alpha
Helix 42
AE6
B
214 232Right-handed alpha
Helix 43
AE7
B
233 235Right-handed 310
Helix 44
AE8
B
240 254Right-handed alpha
Helix 45
AE9
B
262 290Right-handed alpha
Helix 46
AF1
B
305 322Right-handed alpha
Helix 47
AF2
B
326 346Right-handed alpha
Helix 48
AF3
B
353 358Right-handed alpha
Helix 49
AF4
B
369 384Right-handed alpha
Helix 50
AF5
B
409 417Right-handed alpha
Helix 51
AF6
B
418 438Right-handed alpha
Helix 52
AF7
B
439 446Right-handed alpha
Helix 53
AF8
B
447 453Right-handed 310
Helix 54
AF9
B
455 474Right-handed alpha
Helix 55
AG1
B
476 494Right-handed alpha
Helix 56
AG2
B
501 509Right-handed alpha
Helix 57
AG3
B
520 525Right-handed alpha
Helix 58
AG4
B
532 556Right-handed alpha
Helix 59
AG5
B
559 564Right-handed alpha
Helix 60
AG6
B
569 573Right-handed 310
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There are 2 sheets in PDB entry 8W6D. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 393first strand
Strand 2
A
401 402anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
392 393first strand
Strand 2
B
401 402anti-parallel
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