Analysis of interatomic Contacts of Structural Units in PDB entry:
8W6I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W6I entry

There are 4 chains in PDB entry 8W6I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1GLY 217
C
 ASN 53PRO 351
D
 MET 1VAL 219
A
 ASN 53PRO 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 8W6I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
41 48Right-handed alpha
Helix 2
AA2
B
73 78Right-handed alpha
Helix 3
AA3
B
79 81Right-handed 310
Helix 4
AA4
B
95 99Right-handed 310
Helix 5
AA5
B
101 108Right-handed alpha
Helix 6
AA6
B
110 112Right-handed 310
Helix 7
AA7
B
113 124Right-handed alpha
Helix 8
AA8
B
134 138Right-handed 310
Helix 9
AA9
B
139 149Right-handed alpha
Helix 10
AB1
B
169 182Right-handed alpha
Helix 11
AB2
B
183 186Right-handed 310
Helix 12
AB3
B
199 203Right-handed 310
Helix 13
AB4
C
56 70Right-handed alpha
Helix 14
AB5
C
70 83Right-handed alpha
Helix 15
AB6
C
85 102Right-handed alpha
Helix 16
AB7
C
123 134Right-handed alpha
Helix 17
AB8
C
144 160Right-handed alpha
Helix 18
AB9
C
184 198Right-handed alpha
Helix 19
AC1
C
209 215Right-handed alpha
Helix 20
AC2
C
216 250Right-handed alpha
Helix 21
AC3
C
252 261Right-handed alpha
Helix 22
AC4
C
264 304Right-handed alpha
Helix 23
AC5
C
305 309Right-handed 310
Helix 24
AC6
C
319 347Right-handed alpha
Helix 25
AC7
C
348 350Right-handed 310
Helix 26
AC8
D
42 47Right-handed alpha
Helix 27
AC9
D
73 78Right-handed alpha
Helix 28
AD1
D
95 100Right-handed alpha
Helix 29
AD2
D
101 108Right-handed alpha
Helix 30
AD3
D
111 126Right-handed alpha
Helix 31
AD4
D
139 153Right-handed alpha
Helix 32
AD5
D
169 182Right-handed alpha
Helix 33
AD6
D
183 186Right-handed 310
Helix 34
AD7
D
197 202Right-handed alpha
Helix 35
AD8
A
56 68Right-handed alpha
Helix 36
AD9
A
70 85Right-handed alpha
Helix 37
AE1
A
85 101Right-handed alpha
Helix 38
AE2
A
119 133Right-handed alpha
Helix 39
AE3
A
149 154Right-handed alpha
Helix 40
AE4
A
184 192Right-handed alpha
Helix 41
AE5
A
208 250Right-handed alpha
Helix 42
AE6
A
252 261Right-handed alpha
Helix 43
AE7
A
264 288Right-handed alpha
Helix 44
AE8
A
290 299Right-handed alpha
Helix 45
AE9
A
299 307Right-handed alpha
Helix 46
AF1
A
308 310Right-handed 310
Helix 47
AF2
A
319 348Right-handed alpha
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There are 6 sheets in PDB entry 8W6I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
60 61anti-parallel
Strand 3
B
64 65anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 32first strand
Strand 2
B
189 192parallel
Strand 3
B
158 160parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
173 174first strand
Strand 2
C
113 115anti-parallel
Strand 3
C
201 203anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 3first strand
Strand 2
D
24 25anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 33first strand
Strand 2
D
189 193parallel
Strand 3
D
158 161parallel
Strand 4
D
81 83parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 61first strand
Strand 2
D
64 65anti-parallel
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