Analysis of interatomic Contacts of Structural Units in PDB entry:
8W6J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W6J entry

There are 5 chains in PDB entry 8W6J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1HIS 216
A
 PHE 52PRO 351
C
 ASN 53PRO 351
D
 MET 1GLY 217
E
 GLN 91SER 185
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8W6J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
40 50Right-handed alpha
Helix 2
AA2
B
77 79Right-handed 310
Helix 3
AA3
B
95 101Right-handed alpha
Helix 4
AA4
B
101 108Right-handed alpha
Helix 5
AA5
B
110 126Right-handed alpha
Helix 6
AA6
B
139 152Right-handed alpha
Helix 7
AA7
B
169 184Right-handed alpha
Helix 8
AA8
A
53 69Right-handed alpha
Helix 9
AA9
A
70 99Right-handed alpha
Helix 10
AB1
A
120 132Right-handed alpha
Helix 11
AB2
A
144 150Right-handed alpha
Helix 12
AB3
A
150 155Right-handed alpha
Helix 13
AB4
A
187 196Right-handed alpha
Helix 14
AB5
A
212 251Right-handed alpha
Helix 15
AB6
A
251 260Right-handed alpha
Helix 16
AB7
A
264 299Right-handed alpha
Helix 17
AB8
A
301 308Right-handed alpha
Helix 18
AB9
A
319 349Right-handed alpha
Helix 19
AC1
C
64 69Right-handed alpha
Helix 20
AC2
C
70 101Right-handed alpha
Helix 21
AC3
C
121 131Right-handed alpha
Helix 22
AC4
C
144 156Right-handed alpha
Helix 23
AC5
C
191 197Right-handed alpha
Helix 24
AC6
C
209 244Right-handed alpha
Helix 25
AC7
C
244 251Right-handed alpha
Helix 26
AC8
C
251 261Right-handed alpha
Helix 27
AC9
C
264 298Right-handed alpha
Helix 28
AD1
C
302 308Right-handed alpha
Helix 29
AD2
C
319 341Right-handed alpha
Helix 30
AD3
C
342 347Right-handed alpha
Helix 31
AD4
D
40 50Right-handed alpha
Helix 32
AD5
D
73 78Right-handed 310
Helix 33
AD6
D
95 107Right-handed alpha
Helix 34
AD7
D
112 126Right-handed alpha
Helix 35
AD8
D
134 138Right-handed 310
Helix 36
AD9
D
141 152Right-handed alpha
Helix 37
AE1
D
169 178Right-handed alpha
Helix 38
AE2
D
179 183Right-handed 310
Helix 39
AE3
E
92 125Right-handed alpha
Helix 40
AE4
E
140 169Right-handed alpha
Helix 41
AE5
E
172 185Right-handed alpha
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There are 7 sheets in PDB entry 8W6J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 25first strand
Strand 2
B
2 4anti-parallel
Strand 3
B
59 61anti-parallel
Strand 4
B
64 65anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 10first strand
Strand 2
B
16 21anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
189 193parallel
Strand 3
B
158 162parallel
Strand 4
B
81 84parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
112 113first strand
Strand 2
C
204 205anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
137 139first strand
Strand 2
C
177 178anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
21 25first strand
Strand 2
D
2 7anti-parallel
Strand 3
D
59 61anti-parallel
Strand 4
D
64 65anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
81 84first strand
Strand 2
D
158 161parallel
Strand 3
D
189 192parallel
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