Analysis of interatomic Contacts of Structural Units in PDB entry:
8W6V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8W6V entry

There are 2 chains in PDB entry 8W6V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 47	GLU 558
B	SER 47	GLU 558

There are 30 helices in PDB entry 8W6V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	53	Right-handed 310
Helix 2	AA2	A	72	90	Right-handed alpha
Helix 3	AA3	A	110	118	Right-handed alpha
Helix 4	AA4	A	180	189	Right-handed alpha
Helix 5	AA5	A	213	220	Right-handed 310
Helix 6	AA6	A	249	251	Right-handed 310
Helix 7	AA7	A	253	268	Right-handed alpha
Helix 8	AA8	A	292	309	Right-handed alpha
Helix 9	AA9	A	332	344	Right-handed alpha
Helix 10	AB1	A	390	404	Right-handed alpha
Helix 11	AB2	A	404	424	Right-handed alpha
Helix 12	AB3	A	456	458	Right-handed 310
Helix 13	AB4	A	459	468	Right-handed alpha
Helix 14	AB5	A	477	489	Right-handed alpha
Helix 15	AB6	A	538	558	Right-handed alpha
Helix 16	AB7	B	49	53	Right-handed 310
Helix 17	AB8	B	72	90	Right-handed alpha
Helix 18	AB9	B	110	118	Right-handed alpha
Helix 19	AC1	B	180	189	Right-handed alpha
Helix 20	AC2	B	213	220	Right-handed 310
Helix 21	AC3	B	249	251	Right-handed 310
Helix 22	AC4	B	253	268	Right-handed alpha
Helix 23	AC5	B	292	309	Right-handed alpha
Helix 24	AC6	B	332	343	Right-handed alpha
Helix 25	AC7	B	390	404	Right-handed alpha
Helix 26	AC8	B	404	424	Right-handed alpha
Helix 27	AC9	B	456	458	Right-handed 310
Helix 28	AD1	B	459	468	Right-handed alpha
Helix 29	AD2	B	477	489	Right-handed alpha
Helix 30	AD3	B	538	558	Right-handed alpha

There are 6 sheets in PDB entry 8W6V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	66	first strand
Strand 2	A	96	105	parallel
Strand 3	A	238	247	anti-parallel
Strand 4	A	229	234	anti-parallel
Strand 5	A	161	167	anti-parallel
Strand 6	A	124	128	anti-parallel
Strand 7	A	348	353	anti-parallel
Strand 8	A	359	364	anti-parallel
Strand 9	A	516	520	anti-parallel
Strand 10	A	524	534	anti-parallel
Strand 11	A	316	327	anti-parallel
Strand 12	A	284	290	anti-parallel

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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	66	first strand
Strand 2	A	96	105	parallel
Strand 3	A	238	247	anti-parallel
Strand 4	A	229	234	anti-parallel
Strand 5	A	161	167	anti-parallel
Strand 6	A	124	128	anti-parallel
Strand 7	A	348	353	anti-parallel
Strand 8	A	359	364	anti-parallel
Strand 9	A	516	520	anti-parallel
Strand 10	A	524	534	anti-parallel
Strand 11	A	316	327	anti-parallel
Strand 12	A	475	476	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	175	first strand
Strand 2	A	222	226	anti-parallel
Strand 3	A	199	204	anti-parallel
Strand 4	A	499	504	anti-parallel
Strand 5	A	507	512	anti-parallel
Strand 6	A	367	372	anti-parallel
Strand 7	A	375	386	anti-parallel
Strand 8	A	443	453	anti-parallel
Strand 9	A	429	439	anti-parallel

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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	66	first strand
Strand 2	B	96	105	parallel
Strand 3	B	238	247	anti-parallel
Strand 4	B	229	234	anti-parallel
Strand 5	B	161	167	anti-parallel
Strand 6	B	124	128	anti-parallel
Strand 7	B	348	353	anti-parallel
Strand 8	B	359	364	anti-parallel
Strand 9	B	516	520	anti-parallel
Strand 10	B	524	534	anti-parallel
Strand 11	B	316	327	anti-parallel
Strand 12	B	284	290	anti-parallel

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There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	66	first strand
Strand 2	B	96	105	parallel
Strand 3	B	238	247	anti-parallel
Strand 4	B	229	234	anti-parallel
Strand 5	B	161	167	anti-parallel
Strand 6	B	124	128	anti-parallel
Strand 7	B	348	353	anti-parallel
Strand 8	B	359	364	anti-parallel
Strand 9	B	516	520	anti-parallel
Strand 10	B	524	534	anti-parallel
Strand 11	B	316	327	anti-parallel
Strand 12	B	475	476	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	175	first strand
Strand 2	B	222	226	anti-parallel
Strand 3	B	199	204	anti-parallel
Strand 4	B	499	504	anti-parallel
Strand 5	B	507	512	anti-parallel
Strand 6	B	367	372	anti-parallel
Strand 7	B	375	386	anti-parallel
Strand 8	B	443	453	anti-parallel
Strand 9	B	429	439	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8W6V

Analysis of interatomic Contacts of Structural Units in PDB entry:
8W6V