Analysis of interatomic Contacts of Structural Units in PDB entry:
8W72


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W72 entry

There is 1 chain in PDB entry 8W72 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 8GLY 408
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 8W72. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 19Right-handed alpha
Helix 2
AA2
A
20 31Right-handed alpha
Helix 3
AA3
A
48 56Right-handed alpha
Helix 4
AA4
A
64 76Right-handed alpha
Helix 5
AA5
A
88 96Right-handed alpha
Helix 6
AA6
A
97 101Right-handed 310
Helix 7
AA7
A
104 115Right-handed alpha
Helix 8
AA8
A
124 141Right-handed alpha
Helix 9
AA9
A
148 152Right-handed alpha
Helix 10
AB1
A
154 166Right-handed alpha
Helix 11
AB2
A
168 185Right-handed alpha
Helix 12
AB3
A
187 212Right-handed alpha
Helix 13
AB4
A
216 224Right-handed alpha
Helix 14
AB5
A
232 247Right-handed alpha
Helix 15
AB6
A
248 265Right-handed alpha
Helix 16
AB7
A
265 275Right-handed alpha
Helix 17
AB8
A
278 290Right-handed alpha
Helix 18
AB9
A
321 327Right-handed alpha
Helix 19
AC1
A
359 378Right-handed alpha
Helix 20
AC2
A
386 390Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 8W72. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
33 38parallel
Strand 3
A
41 46anti-parallel
Strand 4
A
317 320parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
300 301anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
404 406anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 307first strand
Strand 2
A
310 312anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il