Analysis of interatomic Contacts of Structural Units in PDB entry:
8W78

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8W78 entry

There are 4 chains in PDB entry 8W78 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 41	GLY 454
C	ASP 42	GLY 454
B	GLY 41	ILE 453
D	ASP 42	ILE 453

There are 53 helices in PDB entry 8W78. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	65	Right-handed alpha
Helix 2	AA2	A	82	86	Right-handed 310
Helix 3	AA3	A	101	121	Right-handed alpha
Helix 4	AA4	A	136	153	Right-handed alpha
Helix 5	AA5	A	164	166	Right-handed 310
Helix 6	AA6	A	188	202	Right-handed alpha
Helix 7	AA7	A	247	249	Right-handed 310
Helix 8	AA8	A	250	256	Right-handed alpha
Helix 9	AA9	A	278	284	Right-handed 310
Helix 10	AB1	A	333	340	Right-handed alpha
Helix 11	AB2	A	342	365	Right-handed alpha
Helix 12	AB3	A	365	374	Right-handed alpha
Helix 13	AB4	A	381	383	Right-handed 310
Helix 14	AB5	A	417	421	Right-handed alpha
Helix 15	AB6	A	435	452	Right-handed alpha
Helix 16	AB7	C	51	65	Right-handed alpha
Helix 17	AB8	C	102	121	Right-handed alpha
Helix 18	AB9	C	136	152	Right-handed alpha
Helix 19	AC1	C	164	166	Right-handed 310
Helix 20	AC2	C	188	203	Right-handed alpha
Helix 21	AC3	C	253	259	Right-handed alpha
Helix 22	AC4	C	278	281	Right-handed 310
Helix 23	AC5	C	333	341	Right-handed alpha
Helix 24	AC6	C	342	365	Right-handed alpha
Helix 25	AC7	C	365	374	Right-handed alpha
Helix 26	AC8	C	435	451	Right-handed alpha
Helix 27	AC9	B	51	65	Right-handed alpha
Helix 28	AD1	B	101	122	Right-handed alpha
Helix 29	AD2	B	136	153	Right-handed alpha
Helix 30	AD3	B	163	167	Right-handed alpha
Helix 31	AD4	B	188	203	Right-handed alpha
Helix 32	AD5	B	247	249	Right-handed 310
Helix 33	AD6	B	250	257	Right-handed alpha
Helix 34	AD7	B	278	284	Right-handed 310
Helix 35	AD8	B	333	341	Right-handed alpha
Helix 36	AD9	B	342	365	Right-handed alpha
Helix 37	AE1	B	365	375	Right-handed alpha
Helix 38	AE2	B	381	383	Right-handed 310
Helix 39	AE3	B	417	421	Right-handed alpha
Helix 40	AE4	B	435	451	Right-handed alpha
Helix 41	AE5	D	51	65	Right-handed alpha
Helix 42	AE6	D	101	121	Right-handed alpha
Helix 43	AE7	D	136	142	Right-handed alpha
Helix 44	AE8	D	143	153	Right-handed alpha
Helix 45	AE9	D	188	203	Right-handed alpha
Helix 46	AF1	D	247	249	Right-handed 310
Helix 47	AF2	D	250	257	Right-handed alpha
Helix 48	AF3	D	278	284	Right-handed 310
Helix 49	AF4	D	333	341	Right-handed alpha
Helix 50	AF5	D	342	365	Right-handed alpha
Helix 51	AF6	D	365	374	Right-handed alpha
Helix 52	AF7	D	381	383	Right-handed 310
Helix 53	AF8	D	435	452	Right-handed alpha

There are 27 sheets in PDB entry 8W78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	208	first strand
Strand 2	A	70	73	parallel
Strand 3	A	45	48	parallel
Strand 4	A	242	245	parallel
Strand 5	A	422	427	parallel
Strand 6	A	408	411	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	91	first strand
Strand 2	A	185	186	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	162	first strand
Strand 2	A	177	181	anti-parallel
Strand 3	A	130	134	anti-parallel
Strand 4	A	287	290	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	218	first strand
Strand 2	A	227	230	anti-parallel
Strand 3	A	237	240	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	305	first strand
Strand 2	A	311	314	anti-parallel
Strand 3	A	265	276	anti-parallel
Strand 4	A	318	319	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	305	first strand
Strand 2	A	311	314	anti-parallel
Strand 3	A	265	276	anti-parallel
Strand 4	A	385	397	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	332	first strand
Strand 2	B	330	332	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	208	first strand
Strand 2	C	70	73	parallel
Strand 3	C	45	48	parallel
Strand 4	C	242	245	parallel
Strand 5	C	422	427	parallel
Strand 6	C	408	410	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	91	first strand
Strand 2	C	185	186	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	162	first strand
Strand 2	C	177	181	anti-parallel
Strand 3	C	130	134	anti-parallel
Strand 4	C	287	290	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	229	first strand
Strand 2	C	238	240	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	302	305	first strand
Strand 2	C	311	314	anti-parallel
Strand 3	C	265	276	anti-parallel
Strand 4	C	318	319	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	302	305	first strand
Strand 2	C	311	314	anti-parallel
Strand 3	C	265	276	anti-parallel
Strand 4	C	385	397	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	330	332	first strand
Strand 2	D	330	332	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	208	first strand
Strand 2	B	70	73	parallel
Strand 3	B	45	48	parallel
Strand 4	B	242	245	parallel
Strand 5	B	422	427	parallel
Strand 6	B	408	410	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	185	186	anti-parallel
Strand 3	B	126	127	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	162	first strand
Strand 2	B	177	181	anti-parallel
Strand 3	B	130	134	anti-parallel
Strand 4	B	287	290	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	218	first strand
Strand 2	B	227	230	anti-parallel
Strand 3	B	237	240	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	305	first strand
Strand 2	B	311	314	anti-parallel
Strand 3	B	265	276	anti-parallel
Strand 4	B	318	319	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	305	first strand
Strand 2	B	311	314	anti-parallel
Strand 3	B	265	276	anti-parallel
Strand 4	B	385	397	anti-parallel
Strand 5	B	403	404	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	208	first strand
Strand 2	D	70	73	parallel
Strand 3	D	45	48	parallel
Strand 4	D	242	245	parallel
Strand 5	D	422	427	parallel
Strand 6	D	408	411	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	91	first strand
Strand 2	D	185	186	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	132	first strand
Strand 2	D	287	289	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	161	first strand
Strand 2	D	178	180	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	215	218	first strand
Strand 2	D	227	230	anti-parallel
Strand 3	D	237	240	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	302	305	first strand
Strand 2	D	311	314	anti-parallel
Strand 3	D	265	276	anti-parallel
Strand 4	D	318	319	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	302	305	first strand
Strand 2	D	311	314	anti-parallel
Strand 3	D	265	276	anti-parallel
Strand 4	D	385	397	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8W78

Analysis of interatomic Contacts of Structural Units in PDB entry:
8W78