Analysis of interatomic Contacts of Structural Units in PDB entry:
8W7A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W7A entry

There are 2 chains in PDB entry 8W7A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 4ILE 869
B
 ASN 4ILE 869
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 8W7A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
71 78Right-handed alpha
Helix 2
AA2
A
92 100Right-handed alpha
Helix 3
AA3
A
126 133Right-handed alpha
Helix 4
AA4
A
260 272Right-handed alpha
Helix 5
AA5
A
306 314Right-handed alpha
Helix 6
AA6
A
326 342Right-handed alpha
Helix 7
AA7
A
401 413Right-handed alpha
Helix 8
AA8
A
420 425Right-handed 310
Helix 9
AA9
A
431 445Right-handed alpha
Helix 10
AB1
A
447 452Right-handed alpha
Helix 11
AB2
A
453 461Right-handed alpha
Helix 12
AB3
A
488 509Right-handed alpha
Helix 13
AB4
A
522 526Right-handed 310
Helix 14
AB5
A
537 550Right-handed alpha
Helix 15
AB6
A
557 572Right-handed alpha
Helix 16
AB7
A
584 595Right-handed alpha
Helix 17
AB8
A
597 614Right-handed alpha
Helix 18
AB9
A
624 639Right-handed alpha
Helix 19
AC1
A
642 661Right-handed alpha
Helix 20
AC2
A
691 706Right-handed alpha
Helix 21
AC3
A
707 720Right-handed alpha
Helix 22
AC4
A
721 723Right-handed 310
Helix 23
AC5
A
748 759Right-handed alpha
Helix 24
AC6
A
764 769Right-handed alpha
Helix 25
AC7
A
770 778Right-handed alpha
Helix 26
AC8
A
791 800Right-handed alpha
Helix 27
AC9
A
808 818Right-handed alpha
Helix 28
AD1
A
819 821Right-handed 310
Helix 29
AD2
A
847 861Right-handed alpha
Helix 30
AD3
B
69 74Right-handed alpha
Helix 31
AD4
B
77 82Right-handed alpha
Helix 32
AD5
B
92 100Right-handed alpha
Helix 33
AD6
B
123 128Right-handed alpha
Helix 34
AD7
B
260 265Right-handed alpha
Helix 35
AD8
B
270 275Right-handed alpha
Helix 36
AD9
B
306 313Right-handed alpha
Helix 37
AE1
B
335 344Right-handed alpha
Helix 38
AE2
B
407 412Right-handed alpha
Helix 39
AE3
B
420 425Right-handed 310
Helix 40
AE4
B
431 445Right-handed alpha
Helix 41
AE5
B
448 465Right-handed alpha
Helix 42
AE6
B
488 498Right-handed alpha
Helix 43
AE7
B
500 505Right-handed alpha
Helix 44
AE8
B
507 512Right-handed alpha
Helix 45
AE9
B
536 550Right-handed alpha
Helix 46
AF1
B
557 571Right-handed alpha
Helix 47
AF2
B
584 596Right-handed alpha
Helix 48
AF3
B
598 616Right-handed alpha
Helix 49
AF4
B
625 639Right-handed alpha
Helix 50
AF5
B
643 661Right-handed alpha
Helix 51
AF6
B
663 667Right-handed 310
Helix 52
AF7
B
691 705Right-handed alpha
Helix 53
AF8
B
708 710Right-handed 310
Helix 54
AF9
B
711 722Right-handed alpha
Helix 55
AG1
B
748 757Right-handed alpha
Helix 56
AG2
B
770 778Right-handed alpha
Helix 57
AG3
B
792 799Right-handed alpha
Helix 58
AG4
B
808 813Right-handed alpha
Helix 59
AG5
B
814 819Right-handed alpha
Helix 60
AG6
B
847 860Right-handed alpha
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There are 9 sheets in PDB entry 8W7A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
113 115anti-parallel
Strand 3
A
88 89anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 225first strand
Strand 2
A
229 232anti-parallel
Strand 3
A
245 248anti-parallel
Strand 4
A
294 296anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 305first strand
Strand 2
A
360 361anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
725 727first strand
Strand 2
A
733 737anti-parallel
Strand 3
A
740 742anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
823 825first strand
Strand 2
A
830 832anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 37first strand
Strand 2
B
44 47anti-parallel
Strand 3
B
87 89anti-parallel
Strand 4
B
113 115anti-parallel
Strand 5
B
60 62anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 234first strand
Strand 2
B
243 246anti-parallel
Strand 3
B
295 299anti-parallel
Strand 4
B
284 288anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
304 305first strand
Strand 2
B
360 361anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 351first strand
Strand 2
B
375 376anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il