Analysis of interatomic Contacts of Structural Units in PDB entry:
8W7F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8W7F entry

There are 4 chains in PDB entry 8W7F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 38	GLY 450
B	GLY 41	GLY 454
C	GLY 41	GLY 454
D	ASP 42	ILE 132

There are 58 helices in PDB entry 8W7F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	61	Right-handed alpha
Helix 2	AA2	A	78	82	Right-handed 310
Helix 3	AA3	A	97	118	Right-handed alpha
Helix 4	AA4	A	132	149	Right-handed alpha
Helix 5	AA5	A	159	163	Right-handed alpha
Helix 6	AA6	A	184	199	Right-handed alpha
Helix 7	AA7	A	243	245	Right-handed 310
Helix 8	AA8	A	246	253	Right-handed alpha
Helix 9	AA9	A	274	280	Right-handed 310
Helix 10	AB1	A	329	338	Right-handed alpha
Helix 11	AB2	A	338	361	Right-handed alpha
Helix 12	AB3	A	361	370	Right-handed alpha
Helix 13	AB4	A	377	379	Right-handed 310
Helix 14	AB5	A	414	417	Right-handed alpha
Helix 15	AB6	A	431	447	Right-handed alpha
Helix 16	AB7	B	51	65	Right-handed alpha
Helix 17	AB8	B	82	86	Right-handed 310
Helix 18	AB9	B	101	122	Right-handed alpha
Helix 19	AC1	B	136	153	Right-handed alpha
Helix 20	AC2	B	165	170	Right-handed alpha
Helix 21	AC3	B	188	203	Right-handed alpha
Helix 22	AC4	B	247	249	Right-handed 310
Helix 23	AC5	B	250	257	Right-handed alpha
Helix 24	AC6	B	278	284	Right-handed 310
Helix 25	AC7	B	333	340	Right-handed alpha
Helix 26	AC8	B	342	365	Right-handed alpha
Helix 27	AC9	B	365	374	Right-handed alpha
Helix 28	AD1	B	381	383	Right-handed 310
Helix 29	AD2	B	416	421	Right-handed alpha
Helix 30	AD3	B	435	451	Right-handed alpha
Helix 31	AD4	C	51	65	Right-handed alpha
Helix 32	AD5	C	82	86	Right-handed 310
Helix 33	AD6	C	101	122	Right-handed alpha
Helix 34	AD7	C	136	153	Right-handed alpha
Helix 35	AD8	C	164	169	Right-handed 310
Helix 36	AD9	C	188	203	Right-handed alpha
Helix 37	AE1	C	247	249	Right-handed 310
Helix 38	AE2	C	250	258	Right-handed alpha
Helix 39	AE3	C	278	284	Right-handed 310
Helix 40	AE4	C	333	342	Right-handed alpha
Helix 41	AE5	C	342	365	Right-handed alpha
Helix 42	AE6	C	365	374	Right-handed alpha
Helix 43	AE7	C	381	383	Right-handed 310
Helix 44	AE8	C	435	451	Right-handed alpha
Helix 45	AE9	D	51	65	Right-handed alpha
Helix 46	AF1	D	82	86	Right-handed 310
Helix 47	AF2	D	101	122	Right-handed alpha
Helix 48	AF3	D	136	153	Right-handed alpha
Helix 49	AF4	D	164	170	Right-handed alpha
Helix 50	AF5	D	188	203	Right-handed alpha
Helix 51	AF6	D	247	249	Right-handed 310
Helix 52	AF7	D	250	257	Right-handed alpha
Helix 53	AF8	D	278	284	Right-handed 310
Helix 54	AF9	D	333	341	Right-handed alpha
Helix 55	AG1	D	342	365	Right-handed alpha
Helix 56	AG2	D	365	374	Right-handed alpha
Helix 57	AG3	D	381	383	Right-handed 310
Helix 58	AG4	D	435	452	Right-handed alpha

There are 26 sheets in PDB entry 8W7F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	205	first strand
Strand 2	A	66	70	parallel
Strand 3	A	39	44	parallel
Strand 4	A	233	241	parallel
Strand 5	A	223	226	anti-parallel
Strand 6	A	211	214	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	205	first strand
Strand 2	A	66	70	parallel
Strand 3	A	39	44	parallel
Strand 4	A	233	241	parallel
Strand 5	A	418	423	parallel
Strand 6	A	404	406	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	A	181	182	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	158	first strand
Strand 2	A	173	177	anti-parallel
Strand 3	A	126	130	anti-parallel
Strand 4	A	283	285	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	301	first strand
Strand 2	A	307	310	anti-parallel
Strand 3	A	261	272	anti-parallel
Strand 4	A	314	315	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	301	first strand
Strand 2	A	307	310	anti-parallel
Strand 3	A	261	272	anti-parallel
Strand 4	A	381	393	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	328	first strand
Strand 2	D	330	332	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	208	first strand
Strand 2	B	70	73	parallel
Strand 3	B	43	48	parallel
Strand 4	B	237	245	parallel
Strand 5	B	227	230	anti-parallel
Strand 6	B	215	218	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	208	first strand
Strand 2	B	70	73	parallel
Strand 3	B	43	48	parallel
Strand 4	B	237	245	parallel
Strand 5	B	422	427	parallel
Strand 6	B	408	410	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	185	186	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	162	first strand
Strand 2	B	177	181	anti-parallel
Strand 3	B	130	134	anti-parallel
Strand 4	B	287	290	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	305	first strand
Strand 2	B	311	314	anti-parallel
Strand 3	B	265	276	anti-parallel
Strand 4	B	318	319	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	305	first strand
Strand 2	B	311	314	anti-parallel
Strand 3	B	265	276	anti-parallel
Strand 4	B	385	397	anti-parallel
Strand 5	B	403	404	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	332	first strand
Strand 2	C	330	332	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	208	first strand
Strand 2	C	70	73	parallel
Strand 3	C	42	48	parallel
Strand 4	C	237	245	parallel
Strand 5	C	227	230	anti-parallel
Strand 6	C	215	218	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	208	first strand
Strand 2	C	70	73	parallel
Strand 3	C	42	48	parallel
Strand 4	C	237	245	parallel
Strand 5	C	422	427	parallel
Strand 6	C	408	411	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	91	first strand
Strand 2	C	185	186	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	162	first strand
Strand 2	C	177	181	anti-parallel
Strand 3	C	130	134	anti-parallel
Strand 4	C	287	290	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	302	305	first strand
Strand 2	C	311	314	anti-parallel
Strand 3	C	265	276	anti-parallel
Strand 4	C	318	319	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	302	305	first strand
Strand 2	C	311	314	anti-parallel
Strand 3	C	265	276	anti-parallel
Strand 4	C	385	397	anti-parallel
Strand 5	C	403	404	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	208	first strand
Strand 2	D	70	73	parallel
Strand 3	D	43	48	parallel
Strand 4	D	237	245	parallel
Strand 5	D	227	230	anti-parallel
Strand 6	D	215	218	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	208	first strand
Strand 2	D	70	73	parallel
Strand 3	D	43	48	parallel
Strand 4	D	237	245	parallel
Strand 5	D	422	427	parallel
Strand 6	D	408	410	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	91	first strand
Strand 2	D	185	186	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	162	first strand
Strand 2	D	177	181	anti-parallel
Strand 3	D	130	134	anti-parallel
Strand 4	D	287	290	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	302	305	first strand
Strand 2	D	311	314	anti-parallel
Strand 3	D	265	276	anti-parallel
Strand 4	D	318	319	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	302	305	first strand
Strand 2	D	311	314	anti-parallel
Strand 3	D	265	276	anti-parallel
Strand 4	D	385	397	anti-parallel
Strand 5	D	403	404	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8W7F

Analysis of interatomic Contacts of Structural Units in PDB entry:
8W7F