Analysis of interatomic Contacts of Structural Units in PDB entry:
8W7J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W7J entry

There are 3 chains in PDB entry 8W7J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 3ILE 869
C
 UNK -2UNK 11
B
 ASN 4ILE 869
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 8W7J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
69 76Right-handed alpha
Helix 2
AA2
A
77 82Right-handed alpha
Helix 3
AA3
A
92 100Right-handed alpha
Helix 4
AA4
A
121 131Right-handed alpha
Helix 5
AA5
A
201 206Right-handed alpha
Helix 6
AA6
A
261 274Right-handed alpha
Helix 7
AA7
A
306 310Right-handed alpha
Helix 8
AA8
A
325 340Right-handed alpha
Helix 9
AA9
A
341 346Right-handed alpha
Helix 10
AB1
A
399 417Right-handed alpha
Helix 11
AB2
A
429 443Right-handed alpha
Helix 12
AB3
A
447 462Right-handed alpha
Helix 13
AB4
A
488 512Right-handed alpha
Helix 14
AB5
A
536 548Right-handed alpha
Helix 15
AB6
A
557 568Right-handed alpha
Helix 16
AB7
A
586 595Right-handed alpha
Helix 17
AB8
A
601 614Right-handed alpha
Helix 18
AB9
A
624 639Right-handed alpha
Helix 19
AC1
A
644 663Right-handed alpha
Helix 20
AC2
A
693 705Right-handed alpha
Helix 21
AC3
A
707 722Right-handed alpha
Helix 22
AC4
A
749 759Right-handed alpha
Helix 23
AC5
A
767 769Right-handed 310
Helix 24
AC6
A
770 778Right-handed alpha
Helix 25
AC7
A
807 823Right-handed alpha
Helix 26
AC8
A
847 861Right-handed alpha
Helix 27
AC9
B
68 81Right-handed alpha
Helix 28
AD1
B
95 100Right-handed alpha
Helix 29
AD2
B
124 129Right-handed alpha
Helix 30
AD3
B
267 274Right-handed alpha
Helix 31
AD4
B
305 314Right-handed alpha
Helix 32
AD5
B
325 345Right-handed alpha
Helix 33
AD6
B
399 414Right-handed alpha
Helix 34
AD7
B
430 445Right-handed alpha
Helix 35
AD8
B
447 463Right-handed alpha
Helix 36
AD9
B
473 477Right-handed 310
Helix 37
AE1
B
488 509Right-handed alpha
Helix 38
AE2
B
509 514Right-handed alpha
Helix 39
AE3
B
536 550Right-handed alpha
Helix 40
AE4
B
557 572Right-handed alpha
Helix 41
AE5
B
573 575Right-handed 310
Helix 42
AE6
B
586 595Right-handed alpha
Helix 43
AE7
B
598 614Right-handed alpha
Helix 44
AE8
B
625 626Right-handed 310
Helix 45
AE9
B
628 628Right-handed 310
Helix 46
AF1
B
629 639Right-handed alpha
Helix 47
AF2
B
642 663Right-handed alpha
Helix 48
AF3
B
690 692Right-handed 310
Helix 49
AF4
B
693 705Right-handed alpha
Helix 50
AF5
B
708 722Right-handed alpha
Helix 51
AF6
B
748 757Right-handed alpha
Helix 52
AF7
B
771 778Right-handed alpha
Helix 53
AF8
B
791 800Right-handed alpha
Helix 54
AF9
B
808 820Right-handed alpha
Helix 55
AG1
B
847 860Right-handed alpha
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There are 9 sheets in PDB entry 8W7J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
87 90anti-parallel
Strand 3
A
113 115anti-parallel
Strand 4
A
59 62anti-parallel
Strand 5
A
153 155anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 221first strand
Strand 2
A
230 236anti-parallel
Strand 3
A
242 247anti-parallel
Strand 4
A
297 298anti-parallel
Strand 5
A
284 286anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 305first strand
Strand 2
A
359 361anti-parallel
Strand 3
A
367 369anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 351first strand
Strand 2
A
375 376anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
725 727first strand
Strand 2
A
733 737anti-parallel
Strand 3
A
740 742anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
824 826first strand
Strand 2
A
829 831anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 38first strand
Strand 2
B
43 48anti-parallel
Strand 3
B
87 90anti-parallel
Strand 4
B
113 115anti-parallel
Strand 5
B
59 62anti-parallel
Strand 6
B
153 155anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
725 727first strand
Strand 2
B
733 735anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
823 826first strand
Strand 2
B
829 832anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il