Analysis of interatomic Contacts of Structural Units in PDB entry:
8W7N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8W7N entry

There is 1 chain in PDB entry 8W7N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 33	GLU 1180

There are 22 helices in PDB entry 8W7N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	48	Right-handed alpha
Helix 2	AA2	A	53	59	Right-handed alpha
Helix 3	AA3	A	69	85	Right-handed alpha
Helix 4	AA4	A	91	120	Right-handed alpha
Helix 5	AA5	A	123	145	Right-handed alpha
Helix 6	AA6	A	146	149	Right-handed 310
Helix 7	AA7	A	154	156	Right-handed 310
Helix 8	AA8	A	157	183	Right-handed alpha
Helix 9	AA9	A	185	217	Right-handed alpha
Helix 10	AB1	A	223	240	Right-handed alpha
Helix 11	AB2	A	240	246	Right-handed alpha
Helix 12	AB3	A	247	251	Right-handed 310
Helix 13	AB4	A	270	275	Right-handed alpha
Helix 14	AB5	A	283	290	Right-handed alpha
Helix 15	AB6	A	325	329	Right-handed 310
Helix 16	AB7	A	614	625	Right-handed alpha
Helix 17	AB8	A	640	653	Right-handed alpha
Helix 18	AB9	A	659	680	Right-handed alpha
Helix 19	AC1	A	738	742	Right-handed 310
Helix 20	AC2	A	873	909	Right-handed alpha
Helix 21	AC3	A	924	934	Right-handed alpha
Helix 22	AC4	A	954	975	Right-handed alpha

There are 13 sheets in PDB entry 8W7N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	269	first strand
Strand 2	A	451	456	anti-parallel
Strand 3	A	429	435	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	334	first strand
Strand 2	A	313	324	anti-parallel
Strand 3	A	338	339	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	334	first strand
Strand 2	A	313	324	anti-parallel
Strand 3	A	299	310	anti-parallel
Strand 4	A	348	351	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	401	first strand
Strand 2	A	380	390	anti-parallel
Strand 3	A	357	367	anti-parallel
Strand 4	A	408	409	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	401	first strand
Strand 2	A	380	390	anti-parallel
Strand 3	A	446	448	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	471	474	first strand
Strand 2	A	596	605	anti-parallel
Strand 3	A	498	501	anti-parallel
Strand 4	A	486	488	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	471	474	first strand
Strand 2	A	596	605	anti-parallel
Strand 3	A	522	530	anti-parallel
Strand 4	A	566	569	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	480	481	first strand
Strand 2	A	505	513	anti-parallel
Strand 3	A	580	587	anti-parallel
Strand 4	A	534	540	anti-parallel
Strand 5	A	543	546	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	480	481	first strand
Strand 2	A	505	513	anti-parallel
Strand 3	A	580	587	anti-parallel
Strand 4	A	534	540	anti-parallel
Strand 5	A	549	550	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	700	701	first strand
Strand 2	A	731	737	anti-parallel
Strand 3	A	844	850	anti-parallel
Strand 4	A	760	765	anti-parallel
Strand 5	A	771	774	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	705	706	first strand
Strand 2	A	718	721	anti-parallel
Strand 3	A	856	869	anti-parallel
Strand 4	A	746	758	anti-parallel
Strand 5	A	826	833	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	990	991	first strand
Strand 2	A	1016	1021	anti-parallel
Strand 3	A	1156	1163	anti-parallel
Strand 4	A	1042	1047	anti-parallel
Strand 5	A	1054	1058	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	996	1000	first strand
Strand 2	A	1004	1009	anti-parallel
Strand 3	A	1167	1177	anti-parallel
Strand 4	A	1028	1037	anti-parallel
Strand 5	A	1144	1150	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8W7N

Analysis of interatomic Contacts of Structural Units in PDB entry:
8W7N