Analysis of interatomic Contacts of Structural Units in PDB entry:
8W7P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W7P entry

There are 2 chains in PDB entry 8W7P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 34SER 289
B
 ASN 37GLY 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8W7P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 69Right-handed alpha
Helix 2
AA2
A
70 79Right-handed alpha
Helix 3
AA3
A
84 100Right-handed alpha
Helix 4
AA4
A
129 135Right-handed alpha
Helix 5
AA5
A
136 146Right-handed alpha
Helix 6
AA6
A
191 204Right-handed alpha
Helix 7
AA7
A
233 237Right-handed 310
Helix 8
AA8
A
286 289Right-handed 310
Helix 9
AA9
B
38 69Right-handed alpha
Helix 10
AB1
B
70 78Right-handed alpha
Helix 11
AB2
B
84 100Right-handed alpha
Helix 12
AB3
B
129 136Right-handed alpha
Helix 13
AB4
B
138 146Right-handed alpha
Helix 14
AB5
B
191 202Right-handed alpha
Helix 15
AB6
B
233 237Right-handed 310
Helix 16
AB7
B
285 290Right-handed alpha
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There are 4 sheets in PDB entry 8W7P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 121first strand
Strand 2
A
105 112anti-parallel
Strand 3
A
183 189anti-parallel
Strand 4
A
167 173anti-parallel
Strand 5
A
150 152anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 224first strand
Strand 2
A
211 216anti-parallel
Strand 3
A
277 284anti-parallel
Strand 4
A
258 266anti-parallel
Strand 5
A
249 255anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 121first strand
Strand 2
B
105 112anti-parallel
Strand 3
B
181 189anti-parallel
Strand 4
B
167 174anti-parallel
Strand 5
B
150 152anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 224first strand
Strand 2
B
211 216anti-parallel
Strand 3
B
277 284anti-parallel
Strand 4
B
258 266anti-parallel
Strand 5
B
249 255anti-parallel
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