Analysis of interatomic Contacts of Structural Units in PDB entry:
8W7Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W7Y entry

There is 1 chain in PDB entry 8W7Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 480
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8W7Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 36Right-handed alpha
Helix 2
AA2
A
46 56Right-handed alpha
Helix 3
AA3
A
79 85Right-handed alpha
Helix 4
AA4
A
90 116Right-handed alpha
Helix 5
AA5
A
130 139Right-handed alpha
Helix 6
AA6
A
150 162Right-handed alpha
Helix 7
AA7
A
191 195Right-handed 310
Helix 8
AA8
A
200 209Right-handed alpha
Helix 9
AA9
A
210 217Right-handed 310
Helix 10
AB1
A
229 238Right-handed alpha
Helix 11
AB2
A
247 251Right-handed 310
Helix 12
AB3
A
254 258Right-handed 310
Helix 13
AB4
A
270 276Right-handed alpha
Helix 14
AB5
A
294 309Right-handed alpha
Helix 15
AB6
A
331 341Right-handed alpha
Helix 16
AB7
A
349 355Right-handed alpha
Helix 17
AB8
A
367 378Right-handed alpha
Helix 18
AB9
A
389 400Right-handed alpha
Helix 19
AC1
A
410 414Right-handed 310
Helix 20
AC2
A
418 431Right-handed alpha
Helix 21
AC3
A
432 454Right-handed alpha
Helix 22
AC4
A
457 475Right-handed alpha
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There are 2 sheets in PDB entry 8W7Y. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 66first strand
Strand 2
A
69 76anti-parallel
Strand 3
A
39 45parallel
Strand 4
A
11 15parallel
Strand 5
A
122 125parallel
Strand 6
A
143 147parallel
Strand 7
A
219 222parallel
Strand 8
A
242 244parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 345first strand
Strand 2
A
311 315parallel
Strand 3
A
282 286parallel
Strand 4
A
359 364parallel
Strand 5
A
381 383parallel
Strand 6
A
404 406parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il