Analysis of interatomic Contacts of Structural Units in PDB entry:
8W84

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8W84 entry

There are 4 chains in PDB entry 8W84 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1	PRO 223
B	ASP 1	ARG 212
C	GLU 1	PHE 188
D	LEU -2	GLU 1192

There are 15 helices in PDB entry 8W84. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	63	66	Right-handed 310
Helix 2	AA2	A	88	92	Right-handed 310
Helix 3	AA3	A	101	105	Right-handed 310
Helix 4	AA4	A	166	168	Right-handed 310
Helix 5	AA5	A	195	199	Right-handed 310
Helix 6	AA6	B	79	83	Right-handed 310
Helix 7	AA7	B	122	127	Right-handed alpha
Helix 8	AA8	B	184	188	Right-handed alpha
Helix 9	AA9	C	48	54	Right-handed 310
Helix 10	AB1	C	57	79	Right-handed alpha
Helix 11	AB2	D	1051	1053	Right-handed 310
Helix 12	AB3	D	1054	1063	Right-handed alpha
Helix 13	AB4	D	1064	1078	Right-handed alpha
Helix 14	AB5	D	1078	1088	Right-handed alpha
Helix 15	AB6	D	1089	1093	Right-handed 310

There are 18 sheets in PDB entry 8W84. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	79	84	anti-parallel
Strand 4	A	69	74	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	117	121	parallel
Strand 3	A	93	100	anti-parallel
Strand 4	A	34	40	anti-parallel
Strand 5	A	46	53	anti-parallel
Strand 6	A	59	61	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	117	121	parallel
Strand 3	A	93	100	anti-parallel
Strand 4	A	112	113	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	134	first strand
Strand 2	A	146	155	anti-parallel
Strand 3	A	186	194	anti-parallel
Strand 4	A	173	175	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	134	first strand
Strand 2	A	146	155	anti-parallel
Strand 3	A	186	194	anti-parallel
Strand 4	A	179	180	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	164	first strand
Strand 2	A	205	210	anti-parallel
Strand 3	A	215	220	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	70	75	anti-parallel
Strand 4	B	62	67	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	103	107	parallel
Strand 3	B	85	90	anti-parallel
Strand 4	B	33	38	anti-parallel
Strand 5	B	45	49	anti-parallel
Strand 6	B	53	54	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	103	107	parallel
Strand 3	B	85	90	anti-parallel
Strand 4	B	98	99	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	119	first strand
Strand 2	B	130	136	anti-parallel
Strand 3	B	179	183	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	155	first strand
Strand 2	B	145	151	anti-parallel
Strand 3	B	192	199	anti-parallel
Strand 4	B	206	211	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	46	first strand
Strand 2	C	32	38	anti-parallel
Strand 3	C	22	29	anti-parallel
Strand 4	C	7	17	anti-parallel
Strand 5	D	1008	1018	anti-parallel
Strand 6	D	1023	1032	anti-parallel
Strand 7	D	1035	1041	anti-parallel
Strand 8	D	1047	1049	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	95	first strand
Strand 2	C	105	114	anti-parallel
Strand 3	C	147	155	anti-parallel
Strand 4	C	134	136	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	95	first strand
Strand 2	C	105	114	anti-parallel
Strand 3	C	147	155	anti-parallel
Strand 4	C	140	141	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	129	first strand
Strand 2	C	120	125	anti-parallel
Strand 3	C	163	168	anti-parallel
Strand 4	C	176	179	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1098	1103	first strand
Strand 2	D	1114	1122	anti-parallel
Strand 3	D	1155	1162	anti-parallel
Strand 4	D	1142	1144	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1098	1103	first strand
Strand 2	D	1114	1122	anti-parallel
Strand 3	D	1155	1162	anti-parallel
Strand 4	D	1148	1149	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1136	1138	first strand
Strand 2	D	1128	1133	anti-parallel
Strand 3	D	1170	1176	anti-parallel
Strand 4	D	1184	1189	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8W84

Analysis of interatomic Contacts of Structural Units in PDB entry:
8W84