Analysis of interatomic Contacts of Structural Units in PDB entry:
8W85

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8W85 entry

There are 8 chains in PDB entry 8W85 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1	LYS 219
B	ASP 1	GLY 211
C	ILE 3	PRO 182
D	ILE 0	TRP 1188
E	GLN 1	PRO 128
F	ASP 1	ILE 105
G	VAL 4	PRO 182
H	ILE 0	TRP 1188

There are 19 helices in PDB entry 8W85. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	32	Right-handed 310
Helix 2	AA2	A	88	92	Right-handed 310
Helix 3	AA3	A	161	163	Right-handed 310
Helix 4	AA4	A	192	197	Right-handed alpha
Helix 5	AA5	A	205	209	Right-handed 310
Helix 6	AA6	B	79	83	Right-handed 310
Helix 7	AA7	B	120	127	Right-handed alpha
Helix 8	AA8	C	48	54	Right-handed 310
Helix 9	AA9	C	57	79	Right-handed alpha
Helix 10	AB1	D	1051	1053	Right-handed 310
Helix 11	AB2	D	1054	1064	Right-handed alpha
Helix 12	AB3	D	1064	1078	Right-handed alpha
Helix 13	AB4	D	1078	1089	Right-handed alpha
Helix 14	AB5	E	88	92	Right-handed 310
Helix 15	AB6	G	48	54	Right-handed 310
Helix 16	AB7	G	57	79	Right-handed alpha
Helix 17	AB8	H	1054	1064	Right-handed alpha
Helix 18	AB9	H	1064	1078	Right-handed alpha
Helix 19	AC1	H	1078	1088	Right-handed alpha

There are 29 sheets in PDB entry 8W85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	79	84	anti-parallel
Strand 4	A	69	74	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	113	116	parallel
Strand 3	A	93	99	anti-parallel
Strand 4	A	34	40	anti-parallel
Strand 5	A	46	53	anti-parallel
Strand 6	A	59	61	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	129	first strand
Strand 2	A	141	150	anti-parallel
Strand 3	A	181	189	anti-parallel
Strand 4	A	168	170	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	129	first strand
Strand 2	A	141	150	anti-parallel
Strand 3	A	181	189	anti-parallel
Strand 4	A	174	175	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	159	first strand
Strand 2	A	199	204	anti-parallel
Strand 3	A	212	216	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	70	75	anti-parallel
Strand 4	B	62	67	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	101	105	parallel
Strand 3	B	85	90	anti-parallel
Strand 4	B	34	38	anti-parallel
Strand 5	B	45	48	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	101	105	parallel
Strand 3	B	85	90	anti-parallel
Strand 4	B	96	97	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	117	first strand
Strand 2	B	128	138	anti-parallel
Strand 3	B	172	181	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	154	first strand
Strand 2	B	144	149	anti-parallel
Strand 3	B	190	196	anti-parallel
Strand 4	B	204	209	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	46	first strand
Strand 2	C	32	38	anti-parallel
Strand 3	C	22	29	anti-parallel
Strand 4	C	7	17	anti-parallel
Strand 5	D	1008	1018	anti-parallel
Strand 6	D	1023	1032	anti-parallel
Strand 7	D	1035	1041	anti-parallel
Strand 8	D	1047	1049	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	95	first strand
Strand 2	C	105	114	anti-parallel
Strand 3	C	147	155	anti-parallel
Strand 4	C	134	136	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	130	first strand
Strand 2	C	121	125	anti-parallel
Strand 3	C	163	167	anti-parallel
Strand 4	C	176	180	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1098	1103	first strand
Strand 2	D	1115	1122	anti-parallel
Strand 3	D	1155	1161	anti-parallel
Strand 4	D	1142	1144	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1098	1103	first strand
Strand 2	D	1115	1122	anti-parallel
Strand 3	D	1155	1161	anti-parallel
Strand 4	D	1148	1149	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1128	1130	first strand
Strand 2	D	1172	1176	anti-parallel
Strand 3	D	1184	1187	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	112	116	parallel
Strand 3	E	93	99	anti-parallel
Strand 4	E	34	40	anti-parallel
Strand 5	E	46	53	anti-parallel
Strand 6	E	59	61	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	20	first strand
Strand 2	E	79	84	anti-parallel
Strand 3	E	69	74	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	6	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	70	75	anti-parallel
Strand 4	F	62	67	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	101	104	parallel
Strand 3	F	85	90	anti-parallel
Strand 4	F	34	38	anti-parallel
Strand 5	F	45	46	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	101	104	parallel
Strand 3	F	85	90	anti-parallel
Strand 4	F	96	97	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	22	23	first strand
Strand 2	G	7	17	anti-parallel
Strand 3	G	25	29	anti-parallel
Strand 4	G	32	38	anti-parallel
Strand 5	G	43	46	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	22	23	first strand
Strand 2	G	7	17	anti-parallel
Strand 3	H	1008	1018	anti-parallel
Strand 4	H	1023	1032	anti-parallel
Strand 5	H	1035	1041	anti-parallel
Strand 6	H	1047	1049	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	95	first strand
Strand 2	G	105	114	anti-parallel
Strand 3	G	147	155	anti-parallel
Strand 4	G	134	136	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	95	first strand
Strand 2	G	105	114	anti-parallel
Strand 3	G	147	155	anti-parallel
Strand 4	G	140	141	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	128	129	first strand
Strand 2	G	120	125	anti-parallel
Strand 3	G	164	168	anti-parallel
Strand 4	G	176	179	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1098	1102	first strand
Strand 2	H	1116	1122	anti-parallel
Strand 3	H	1155	1161	anti-parallel
Strand 4	H	1142	1144	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1098	1102	first strand
Strand 2	H	1116	1122	anti-parallel
Strand 3	H	1155	1161	anti-parallel
Strand 4	H	1148	1149	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1128	1129	first strand
Strand 2	H	1173	1176	anti-parallel
Strand 3	H	1184	1186	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8W85

Analysis of interatomic Contacts of Structural Units in PDB entry:
8W85